Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate Synpcc7942_0915 Synpcc7942_0915 3-dehydroquinate dehydratase
Query= BRENDA::D4LCT8
(148 letters)
>FitnessBrowser__SynE:Synpcc7942_0915
Length = 149
Score = 168 bits (426), Expect = 3e-47
Identities = 80/148 (54%), Positives = 104/148 (70%)
Query: 1 MRILVIHGPNLNLLGEREPGIYGKNDLAHVNGAILTRAKELGVECEVFQSNHEGEILVRL 60
++ILV+HGPNLNLLG REP IYG+ LA ++ ++ + LGV+ QSNHEG ++ +
Sbjct: 2 LKILVLHGPNLNLLGLREPTIYGQTTLAEIDADLIQLGQTLGVDVSTLQSNHEGVLVDAI 61
Query: 61 HEARHAFDGVVLNAGAYTHYSYAIRDAIAAIRIPCVEVHISNVHAREEFRHTSVIAPACL 120
H AR DG+V+NAGAYTH S AIRDAIA +IP VEVH+SN+H RE FRH S +AP +
Sbjct: 62 HTAREHQDGLVINAGAYTHTSVAIRDAIAGTQIPTVEVHLSNIHKREAFRHHSYLAPVVV 121
Query: 121 GVVCGFGGDSYLLALEGLVRHCAGQKTL 148
G +CGFG DSY L L+ +V H T+
Sbjct: 122 GQICGFGPDSYRLGLQAIVNHLQALATV 149
Lambda K H
0.324 0.141 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 149
Length adjustment: 16
Effective length of query: 132
Effective length of database: 133
Effective search space: 17556
Effective search space used: 17556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 42 (20.8 bits)
Align candidate Synpcc7942_0915 Synpcc7942_0915 (3-dehydroquinate dehydratase)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.6555.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6555.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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