Alignments for a candidate for cysE in Synechococcus elongatus PCC 7942

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate Synpcc7942_2420 Synpcc7942_2420 serine O-acetyltransferase

Query= SwissProt::Q06750
         (217 letters)



>FitnessBrowser__SynE:Synpcc7942_2420
          Length = 244

 Score =  216 bits (549), Expect = 4e-61
 Identities = 106/206 (51%), Positives = 146/206 (70%), Gaps = 1/206 (0%)

Query: 3   FRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSR 62
           F+ L  D   +F++DPAAR+  EV+L Y G  A+  HR+AH LY+++   + RL+S +SR
Sbjct: 2   FKTLAADFRIIFERDPAARNGLEVLLCYPGFQALVCHRVAHWLYQQRLPVIPRLLSHLSR 61

Query: 63  FFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIK 122
             TG+EIHPGA +G+  FIDHGMGVVIGET  +G+   ++QGVTLGGTGK+ GKRHPT+ 
Sbjct: 62  LLTGVEIHPGARLGQGIFIDHGMGVVIGETAIVGDYCLIYQGVTLGGTGKQSGKRHPTLA 121

Query: 123 DDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKKVRRDLNH 182
           ++ ++  GAKVLG+I +GE  +IGAGSVVL DVP   TVVGIPGRV+ ++G +V   L+H
Sbjct: 122 NNVVVGAGAKVLGNIQIGENVRIGAGSVVLRDVPSDCTVVGIPGRVIYRSGVRV-DPLDH 180

Query: 183 QDLPDPVADRFKSLEQQILELKAELE 208
             +PD  A   + L  +I  L+ +LE
Sbjct: 181 SQMPDSEARVIRMLLDRIEALEDQLE 206


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 220
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 244
Length adjustment: 23
Effective length of query: 194
Effective length of database: 221
Effective search space:    42874
Effective search space used:    42874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)

Align candidate Synpcc7942_2420 Synpcc7942_2420 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.11813.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11813.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.