Alignments for a candidate for hisE in Synechococcus elongatus PCC 7942

Align putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) (characterized)
to candidate Synpcc7942_1995 Synpcc7942_1995 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein

Query= metacyc::HISTCYCLOPRATPPHOS
         (203 letters)



>FitnessBrowser__SynE:Synpcc7942_1995
          Length = 211

 Score =  147 bits (372), Expect = 1e-40
 Identities = 80/193 (41%), Positives = 115/193 (59%), Gaps = 6/193 (3%)

Query: 17  GLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQRLWTKGETSGNFLNVVS 76
           GL+P I Q  + G VLML +MN EAL+KTLE+G+V ++SR++Q LW KG TSG+F  + +
Sbjct: 19  GLLPAIAQDYLDGTVLMLAWMNREALEKTLETGEVWYWSRSRQELWHKGATSGHFQKLQA 78

Query: 77  IAPDCDNDTLLVLANPIGP-TCHKGTSSCFGD-----TAHQWLFLYQLEQLLAERKSADP 130
           I  DCD+D LL+    IG   CH G  SCF       T      L ++ +++ +R+    
Sbjct: 79  IRYDCDSDALLLTIEQIGDIACHTGERSCFHRDVDVVTPPPADILTEVYRVVCDRRDRPS 138

Query: 131 ETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHLLVLLQDQGLD 190
           E SYT+KL+A G  +I +K+GEE  E  +A    D   L  EA+DL +H LV L    +D
Sbjct: 139 EASYTSKLFAGGDNKILKKIGEEAAEVVMACKDDDADGLAGEAADLFFHTLVALAQHNVD 198

Query: 191 LTTVIENLRKRHQ 203
           L +V   L++R +
Sbjct: 199 LRSVYRKLQERRR 211


Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 118
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 211
Length adjustment: 21
Effective length of query: 182
Effective length of database: 190
Effective search space:    34580
Effective search space used:    34580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)

Align candidate Synpcc7942_1995 Synpcc7942_1995 (bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein)
to HMM PF01502 (PRA-CH)

Software error:

../bin/blast/fastacmd -i /tmp/list.29069.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29069.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.