Alignments for a candidate for hisG in Synechococcus elongatus PCC 7942

Align ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 (uncharacterized)
to candidate Synpcc7942_0783 Synpcc7942_0783 ATP phosphoribosyltransferase catalytic subunit

Query= curated2:B0JK88
         (216 letters)



>FitnessBrowser__SynE:Synpcc7942_0783
          Length = 218

 Score =  293 bits (749), Expect = 2e-84
 Identities = 148/211 (70%), Positives = 177/211 (83%)

Query: 1   MLTIALPKGALLNESIQIFQKIGLDFSAFLDSKNRQLQITDPTNQAKALLVRATDVPVYV 60
           MLTIALPKGALL +SI++ Q  GLDFSAFL+  NRQLQI D   +AKALLVR +DVPVYV
Sbjct: 1   MLTIALPKGALLKDSIRLLQSAGLDFSAFLEPGNRQLQILDRQERAKALLVRNSDVPVYV 60

Query: 61  EYGQAQLGIAGYDVLLEKSPDVANLIDLKFGYCRMSVAVPADSPYQSPLDIPHHGKVASK 120
           EYGQAQLG+ GYDVL EK+  VA LIDL+FG CRMS+AV A SPY+S LD+P H ++ASK
Sbjct: 61  EYGQAQLGVVGYDVLREKTARVAQLIDLRFGGCRMSIAVKASSPYRSVLDLPAHCRIASK 120

Query: 121 FVNCAKDYFRRLDIPVEIIPLYGSVELGPITGMSEAIVDLVSTGRTLRENGLVEIDELFA 180
           FV+CA+DYF  LD+PVEI+PL GSVELGPITGMSEAIVDLV+TG+TLRENGLVEI+ LF 
Sbjct: 121 FVHCARDYFHNLDLPVEIVPLSGSVELGPITGMSEAIVDLVATGQTLRENGLVEIETLFD 180

Query: 181 SSARLIAHPLSYRLDRDQIYNWVEKLREPTT 211
           S+ARLIA+PL+YR++ D I   +E+LR+  T
Sbjct: 181 STARLIANPLAYRINADGISELIEELRQSVT 211


Lambda     K      H
   0.320    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 201
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 218
Length adjustment: 22
Effective length of query: 194
Effective length of database: 196
Effective search space:    38024
Effective search space used:    38024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)

Align candidate Synpcc7942_0783 Synpcc7942_0783 (ATP phosphoribosyltransferase catalytic subunit)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.18940.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18940.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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