Alignments for a candidate for leuC in Synechococcus elongatus PCC 7942

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate Synpcc7942_1898 Synpcc7942_1898 isopropylmalate isomerase large subunit

Query= uniprot:A0A1X9Z7T5
         (470 letters)



>FitnessBrowser__SynE:Synpcc7942_1898
          Length = 468

 Score =  504 bits (1297), Expect = e-147
 Identities = 253/464 (54%), Positives = 323/464 (69%), Gaps = 1/464 (0%)

Query: 4   TLVEKIWDAHVVKSEEGFPDILYIDTHLIHEVTSPQAFDGLRKRGLPVFRPKQTVATADH 63
           TL +K+WD H V +       L+I  HLIHEVTSPQAF  LR RGL V  P +TVAT DH
Sbjct: 5   TLFDKVWDLHTVATLPSGQTQLFIGLHLIHEVTSPQAFSMLRDRGLTVKFPGRTVATVDH 64

Query: 64  NVPTLNQLLPIKEELSRYQVDMLTKNCAEFGVELYGLGHPFQGIVHVIGPELGITLPGKT 123
            VPT NQ  P  + L+   +  L +NC E G+  Y +G   QGIVHVI PE G+T PG T
Sbjct: 65  IVPTENQARPFADSLAEEMIVTLERNCRENGIRFYNIGSGSQGIVHVIAPEQGLTQPGMT 124

Query: 124 MVCGDSHTSTHGAFGAIAFGIGTSQVEQVFATQCLLQSKPKTMKIEVNGELGKGVGAKDI 183
           + CGDSHTSTHGAFGAIAFGIGTSQV  V A+Q L  SK K  KIEVNGEL  GV AKD+
Sbjct: 125 IACGDSHTSTHGAFGAIAFGIGTSQVRDVLASQTLALSKLKVRKIEVNGELQPGVYAKDV 184

Query: 184 ILYIIAKISAAGGTGYFIEYAGSAIEALSMEARMTICNMSIEMGARGGLIAPDQTTFDYI 243
           IL+II K+   GG GY  E+AGS   A+SME RMT+CNM+IE GAR G + PDQ T+DY+
Sbjct: 185 ILHIIRKLGVKGGVGYAYEFAGSTFAAMSMEERMTVCNMAIEGGARCGYVNPDQITYDYL 244

Query: 244 KGREFAPAGEEWDKALAYWKTLYSDADAKFDSVLTFDAADIAPMITYGTNPGMGMGIQEH 303
           +GREFAP GE WD+A+A+W++L S+ADA++D V+ FDAA+IAP +T+G  PG G+GI E 
Sbjct: 245 QGREFAPQGEAWDRAIAWWESLRSEADAEYDDVVVFDAAEIAPTVTWGITPGQGIGITET 304

Query: 304 IPATGAQPEKEKLSYQKALDYMGFDDDSSLIGKPVDYVFIGSCTNSRIEDLREVADFVKD 363
           IP   +  ++++    +A  YM  +  + L G  VD  FIGSCTN R+ DLRE A   + 
Sbjct: 305 IPTPDSLLDEDRAVAAEAYSYMDLEPGAPLQGTKVDVCFIGSCTNGRLSDLREAAKVAQG 364

Query: 364 KRKADNVTVWIVPGSKQVEQQAKNEGLDKIFEAAGFQLREPGCSACLGMNEDKIPAGKYC 423
           ++ A  +  ++VPGS++V+QQA+ EGLD+IF AAGF+ R+ GCS CL MN DK+   +  
Sbjct: 365 RKVAAGIKAFVVPGSERVKQQAEAEGLDQIFTAAGFEWRQAGCSMCLAMNPDKLEGRQIS 424

Query: 424 VSTSNRNFEGRQGQ-NARTLLASPLTAAAAAVTGKITDVRDLLD 466
            S+SNRNF+GRQG  + RTLL SP   AAAA+ G++TDVR+ L+
Sbjct: 425 ASSSNRNFKGRQGSASGRTLLMSPAMVAAAAIAGEVTDVRNWLN 468


Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 607
Number of extensions: 26
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 468
Length adjustment: 33
Effective length of query: 437
Effective length of database: 435
Effective search space:   190095
Effective search space used:   190095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate Synpcc7942_1898 Synpcc7942_1898 (isopropylmalate isomerase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.31518.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31518.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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