Alignments for a candidate for lysA in Synechococcus elongatus PCC 7942

Align diaminopimelate decarboxylase subunit (EC 4.1.1.20) (characterized)
to candidate Synpcc7942_0262 Synpcc7942_0262 diaminopimelate decarboxylase

Query= metacyc::MONOMER-6601
         (439 letters)



>FitnessBrowser__SynE:Synpcc7942_0262
          Length = 464

 Score =  364 bits (935), Expect = e-105
 Identities = 196/433 (45%), Positives = 274/433 (63%), Gaps = 19/433 (4%)

Query: 6   TSRQNQHGHLEIGGVDALYLAEKYGTPLYVYDVALIRERAKSFKQAFISAGLKAQVA-YA 64
           T+     G LE+GG     L E+YG+PLY+ D   +R   +S++ A       A +  YA
Sbjct: 35  TASVTADGQLEVGGCRVSDLVERYGSPLYILDEQTLRAACQSYRSALAHHYPGAALPIYA 94

Query: 65  SKAFSSVAMIQLAEEEGLSLDVVSGGELYTAVAAGFPAERIHFHGNNKSREELRMALEHR 124
           SKA++ +A+  L  +EGL +DVVS GELYTA+ AG P++R++FHGNNKS  EL M +E  
Sbjct: 95  SKAWNCLAVCALVAQEGLGIDVVSAGELYTALQAGVPSDRLYFHGNNKSLSELAMGVE-- 152

Query: 125 IGC-IVVDNFYEIALLEDLCKETGHSIDVLLRITPGVEAHTHDYITTGQEDSKFGFDLHN 183
            GC IVVDN+ E+  LE +  E    + V++R TPG+E HTH+YI TG  DSKFGFD   
Sbjct: 153 AGCTIVVDNWQELRNLEAIAAEQQREVRVMIRFTPGIECHTHEYIRTGHLDSKFGFD--P 210

Query: 184 GQTERAIEQVLQSEHIQLLGVHCHIGSQIF------DTAGFVLAAEKIFKKLDEWRDSYS 237
            Q +  +  ++   +++ +G+H HIGSQIF      D AG ++ A    K L     +  
Sbjct: 211 DQLDALLAALVDQPYLRCIGLHAHIGSQIFELQPHADLAGVLVGAYA--KAL-----ALG 263

Query: 238 FVSKVLNLGGGFGIRYTEDDEPLHATEYVEKIIEAVKENASRYGFDIPEIWIEPGRSLVG 297
                LN+GGG GIRYTE D+P    E+V ++ E++          +P++  EPGRSL+G
Sbjct: 264 LPIAELNVGGGLGIRYTESDDPPSIDEWVRQVSESLVAACQAADLPLPKLICEPGRSLIG 323

Query: 298 DAGTTLYTVGSQKEVPGVRQYVAVDGGMNDNIRPALYQAKYEAAAANRIGEAHDKTVSIA 357
            A  T Y +GS+KEVPG+R Y+AVDGGM+DN RP  YQ+ Y A  ANR+  +  +TV++A
Sbjct: 324 TACVTAYQIGSRKEVPGIRTYLAVDGGMSDNPRPITYQSTYRAVIANRLNVSDRETVTVA 383

Query: 358 GKCCESGDMLIWDIDLPEVKEGDLLAVFCTGAYGYSMANNYNRIPRPAVVFVENGEAHLV 417
           GK CESGD+L+ D +L   + GD+L V  TGAY YSMA+NYNRI RPA V V NGEA ++
Sbjct: 384 GKHCESGDVLLKDAELAPSQPGDILVVLATGAYNYSMASNYNRIARPAAVLVNNGEAQII 443

Query: 418 VKRETYEDIVKLD 430
           + RE+ +D+++ D
Sbjct: 444 LARESLQDLLRQD 456


Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 510
Number of extensions: 17
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 464
Length adjustment: 33
Effective length of query: 406
Effective length of database: 431
Effective search space:   174986
Effective search space used:   174986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate Synpcc7942_0262 Synpcc7942_0262 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.28873.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28873.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.