Alignments for a candidate for thrB in Synechococcus elongatus PCC 7942

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (uncharacterized)
to candidate Synpcc7942_1440 Synpcc7942_1440 homoserine kinase

Query= curated2:Q31N99
         (306 letters)



>FitnessBrowser__SynE:Synpcc7942_1440
          Length = 306

 Score =  603 bits (1556), Expect = e-177
 Identities = 306/306 (100%), Positives = 306/306 (100%)

Query: 1   MRVRVAVPATTANLGPGFDCLGAALTLYNHFWFAPASTGELEITARGMDAEKISGDRDNL 60
           MRVRVAVPATTANLGPGFDCLGAALTLYNHFWFAPASTGELEITARGMDAEKISGDRDNL
Sbjct: 1   MRVRVAVPATTANLGPGFDCLGAALTLYNHFWFAPASTGELEITARGMDAEKISGDRDNL 60

Query: 61  VYRAFAAFFEKQEQPVPALKLEIELAVPLARGLGSSATAIVAGLVGANALAGSPWSNAQL 120
           VYRAFAAFFEKQEQPVPALKLEIELAVPLARGLGSSATAIVAGLVGANALAGSPWSNAQL
Sbjct: 61  VYRAFAAFFEKQEQPVPALKLEIELAVPLARGLGSSATAIVAGLVGANALAGSPWSNAQL 120

Query: 121 CDLATELEGHPDNVVPALLGGCRLAARDRQNQWAIADLDWHPDFIPVVAIPDFELSTEAA 180
           CDLATELEGHPDNVVPALLGGCRLAARDRQNQWAIADLDWHPDFIPVVAIPDFELSTEAA
Sbjct: 121 CDLATELEGHPDNVVPALLGGCRLAARDRQNQWAIADLDWHPDFIPVVAIPDFELSTEAA 180

Query: 181 RQVLPTQYSRSDAIFNAAHVGLVVRSLASGNGEWLAAALQDRLHQPYRQALIPGYAAVET 240
           RQVLPTQYSRSDAIFNAAHVGLVVRSLASGNGEWLAAALQDRLHQPYRQALIPGYAAVET
Sbjct: 181 RQVLPTQYSRSDAIFNAAHVGLVVRSLASGNGEWLAAALQDRLHQPYRQALIPGYAAVET 240

Query: 241 AALEAGAFGLVISGAGPTLLAISSPDRAEAVRQAMLTTWQATGLSVRAEILAIAESGTQI 300
           AALEAGAFGLVISGAGPTLLAISSPDRAEAVRQAMLTTWQATGLSVRAEILAIAESGTQI
Sbjct: 241 AALEAGAFGLVISGAGPTLLAISSPDRAEAVRQAMLTTWQATGLSVRAEILAIAESGTQI 300

Query: 301 EQETEN 306
           EQETEN
Sbjct: 301 EQETEN 306


Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 451
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 306
Length adjustment: 27
Effective length of query: 279
Effective length of database: 279
Effective search space:    77841
Effective search space used:    77841
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate Synpcc7942_1440 Synpcc7942_1440 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.24470.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24470.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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