Alignments for a candidate for thrC in Synechococcus elongatus PCC 7942

Align threonine synthase; EC 4.2.3.1 (characterized)
to candidate Synpcc7942_1782 Synpcc7942_1782 threonine synthase

Query= CharProtDB::CH_107419
         (405 letters)



>FitnessBrowser__SynE:Synpcc7942_1782
          Length = 430

 Score =  277 bits (708), Expect = 5e-79
 Identities = 161/403 (39%), Positives = 235/403 (58%), Gaps = 8/403 (1%)

Query: 4   LKCIECGAEYSRDEVIYTCSKCDGLLDVIYDYSSIKIDMEKLKTECP--SVWKYAKLLPV 61
           LKC ECG EY           C G L+V+YDY +I+  + +   E    S+W+Y   LPV
Sbjct: 14  LKCKECGHEYDLGAKHVCEDVCFGPLEVVYDYDAIRQRVSRATIEAGPNSIWRYRHFLPV 73

Query: 62  EREPVT-IQEGGTPLYKCDRLAEKIGIKKLYVKHEGMN-PTGSFKDRGMTVGVTKALELG 119
             E V  +  G TPL +  RLA ++G+KKL++K++ +N PT SFKDR ++V +T+A ELG
Sbjct: 74  TGEDVIDVGTGMTPLVEAKRLARRLGLKKLFIKNDAVNMPTLSFKDRVVSVALTRARELG 133

Query: 120 MNTVACASTGNTSAALAIYGAKAGIPVVVLLPAGKVALGKVAQALMHGAKVLSIRGNFDD 179
            +TV+CASTGN + + A   A AG+   V +PA   A GKV   L++   +++++GN+D 
Sbjct: 134 FSTVSCASTGNLANSTAAIAAHAGLDCCVFIPADLEA-GKVLGTLIYNPTLMAVKGNYDQ 192

Query: 180 ALALVRTLCSQEKIYLLN-SINPYRLEGQKTIGFEIADQLDFKVPDRIVLPVGNAGNITA 238
              L   + +      +N ++ PY  EG KT+G+E+A+QL +++PD IV P+ +    T 
Sbjct: 193 VNRLCSEVANTHGWGFVNINLRPYYSEGSKTLGYEVAEQLGWQLPDHIVAPLASGSLFTK 252

Query: 239 IYKGFREFKILGITDSLP-KMTGIQAEGSCPIVKAIKSGAPAITPEENPETVATAIRIGN 297
           IYKGFREF  +G+ D    + +G QAEG  PI KA   G   I PE+ P T+A +I IGN
Sbjct: 253 IYKGFREFVDVGLVDDKAVRFSGAQAEGCSPIAKAFHEGRDFIAPEK-PNTIAKSIAIGN 311

Query: 298 PVNATKALSAIRESGGTAESVTDEEILAAQKDLARLEGIGVEPASAASVAGLRKLVDMGV 357
           P +   A+   R++GG  E+V D EI+   K LA  EGI  E A   +VA L+KLV+ G 
Sbjct: 312 PADGIYAVEIARKTGGNIEAVNDTEIIEGIKLLAETEGIFTETAGGTTVAVLKKLVEAGK 371

Query: 358 IGRDETVVCITTGHLLKDPQTVIDVCEEPTVVDANIDAIREAI 400
           I  DET V   TG+ LK  + V     EP  ++  +++   A+
Sbjct: 372 INPDETTVVYITGNGLKTQEAVQGYIAEPFTIEPKLESFEHAL 414


Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 468
Number of extensions: 33
Number of successful extensions: 9
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 430
Length adjustment: 32
Effective length of query: 373
Effective length of database: 398
Effective search space:   148454
Effective search space used:   148454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate Synpcc7942_1782 Synpcc7942_1782 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.10799.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10799.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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