Alignments for a candidate for argB in Sulfuritalea hydrogenivorans DSM 22779

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_041096596.1 SUTH_RS01670 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_000828635.1:WP_041096596.1
          Length = 294

 Score =  365 bits (937), Expect = e-106
 Identities = 182/290 (62%), Positives = 231/290 (79%), Gaps = 3/290 (1%)

Query: 9   AQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG 68
           A  A VL+EALPYI+RF GKT+V+KYGGNAM  E LK  FARDVVL+K VG+NPVVVHGG
Sbjct: 8   AAKAGVLAEALPYIKRFHGKTIVVKYGGNAMTDEHLKQCFARDVVLLKLVGMNPVVVHGG 67

Query: 69  GPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTG 128
           GPQI +LL R+  +  F+ GMRVTDA TMD+VEMVLGGQVNK+IVNLIN+HGG A+GLTG
Sbjct: 68  GPQIENLLARVGKKGEFVQGMRVTDAETMDLVEMVLGGQVNKEIVNLINQHGGKAVGLTG 127

Query: 129 KDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVG 188
           KD   IRAKKL +  +       ++IDIG VG++  ++  L+ +L  G FIPVIAPIGVG
Sbjct: 128 KDGNFIRAKKLMMENKD---APGDLIDIGQVGDIVSIDPSLIALLDTGAFIPVIAPIGVG 184

Query: 189 SNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTI 248
           S GE+YNINAD+VAGK+AE LKAEKL+LLTN  G++D+ G+++TG++ +Q+++++ADGT+
Sbjct: 185 SEGETYNINADVVAGKIAEVLKAEKLVLLTNTPGVLDQSGKLITGITPKQIDDMVADGTL 244

Query: 249 YGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 298
            GGMLPKI  AL+A + GV   HIIDGRV +A+LLEI TD GVGTLI ++
Sbjct: 245 SGGMLPKISSALDAARSGVKGVHIIDGRVEHALLLEIMTDEGVGTLIKSK 294


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 355
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 294
Length adjustment: 26
Effective length of query: 275
Effective length of database: 268
Effective search space:    73700
Effective search space used:    73700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_041096596.1 SUTH_RS01670 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.17862.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17862.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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