Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate WP_041100505.1 SUTH_RS15540 N-acetyl-gamma-glutamyl-phosphate reductase
Query= uniprot:E4PLW0
(388 letters)
>NCBI__GCF_000828635.1:WP_041100505.1
Length = 345
Score = 438 bits (1126), Expect = e-127
Identities = 220/348 (63%), Positives = 264/348 (75%), Gaps = 6/348 (1%)
Query: 44 VIKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYDLAFSEP 103
+IK GIVGGTGYTGVELLR+LA H V ++ ITSR EAG VAEM+ +LRG +L FS+P
Sbjct: 1 MIKAGIVGGTGYTGVELLRLLAQHSGVELTAITSRGEAGTAVAEMFSSLRGSVNLKFSDP 60
Query: 104 DVNVLGACDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMAHESP 163
L CD+VFFATP+G+AM+ L+ +GVRV+DL+ADFR+KD+ +W WYGM+H SP
Sbjct: 61 KDAPLNECDVVFFATPNGIAMQQAASLLESGVRVIDLAADFRIKDIALWEQWYGMSHASP 120
Query: 164 EWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADAKSGA 223
+AVYGLPEV R++IR A+LVANPGCYPTA QLGFLPL++ G +D LIADAKSG
Sbjct: 121 ALVAEAVYGLPEVNREQIRTARLVANPGCYPTATQLGFLPLVQSGCIDLGHLIADAKSGV 180
Query: 224 SGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAG---GDVGVTFVPHLIPM 280
SGAGR+ +IG L E ++FKAYG GHRHLPEIRQGL AAG +G+TFVPHL PM
Sbjct: 181 SGAGRKAEIGTLFSEASDNFKAYGVPGHRHLPEIRQGLARAAGKETNQIGLTFVPHLTPM 240
Query: 281 IRGIEATLYAELKNPADFDRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMALH 340
IRGI ATLYA + DF QA+FEQR+ EPFVDV+P SHPETRSVR AN CR+A+H
Sbjct: 241 IRGIHATLYARITREEDF---QAMFEQRYAAEPFVDVLPPKSHPETRSVRAANTCRIAIH 297
Query: 341 RQEQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388
R + + ++V SVIDNLVKGAAGQAVQNMNIMFGL E GL +LP
Sbjct: 298 RPQGGDTLVVLSVIDNLVKGAAGQAVQNMNIMFGLDECSGLSQVPVLP 345
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 416
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 345
Length adjustment: 30
Effective length of query: 358
Effective length of database: 315
Effective search space: 112770
Effective search space used: 112770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)
Align candidate WP_041100505.1 SUTH_RS15540 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.4195.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4195.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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