Alignments for a candidate for argG in Sulfuritalea hydrogenivorans DSM 22779

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_041101760.1 SUTH_RS05540 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000828635.1:WP_041101760.1
          Length = 422

 Score =  489 bits (1260), Expect = e-143
 Identities = 246/397 (61%), Positives = 306/397 (77%), Gaps = 7/397 (1%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGAS-KAIALD 60
           K+VLAYSGGLDTS+ILKWL++TY  EV+ FTAD+GQGEE+E AR KAL+ G   K I +D
Sbjct: 14  KVVLAYSGGLDTSVILKWLQDTYNCEVVTFTADLGQGEELEPARTKALKMGIKPKNIFID 73

Query: 61  -LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG 119
            L+EEFVRDFVFPM R   VYEG YLLGTSIARPLIAK LV IA++ GA +I+HGATGKG
Sbjct: 74  DLREEFVRDFVFPMFRCNTVYEGEYLLGTSIARPLIAKRLVEIAKKTGANSISHGATGKG 133

Query: 120 NDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK---PYSMDA 176
           NDQVRFEL AYAL P++KVIAPWREW    R++++AYAE HGIPV +  +K   PYSMDA
Sbjct: 134 NDQVRFELGAYALMPNVKVIAPWREWDLLSREKLMAYAEKHGIPVEMKHKKGGSPYSMDA 193

Query: 177 NLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPA 236
           NLLHISYEG  LE+P AE  + M+R T  PE+APD  EY+++EF  GD VA+NG+++   
Sbjct: 194 NLLHISYEGRHLENPGAEAEESMWRWTVSPEKAPDKAEYLDLEFKRGDLVAINGKKMKAH 253

Query: 237 ALLQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLH 296
            LL  LN++GG+HG+GR+D+VENR+VGMKSRG YETPGG+IL  A RA+ES+ LDRE  H
Sbjct: 254 ELLATLNQLGGKHGIGRLDLVENRYVGMKSRGCYETPGGSILLKAHRAIESVCLDREEAH 313

Query: 297 QRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKA-PK 355
            +D L P+YA L+Y G+W++PER ALQ   DH  + V G  RLKLYKGNV VV R +   
Sbjct: 314 LKDDLMPRYASLIYNGYWWSPERRALQTLIDHTQQHVNGWVRLKLYKGNVIVVSRDSKTD 373

Query: 356 SLYRQDLVSF-DEAGGYDQKDAEGFIKIQALRLRVRA 391
           SL+   + +F D+AG Y+QKDA GFI++ ALR+R+ A
Sbjct: 374 SLFDPTIATFEDDAGAYNQKDAHGFIRLNALRMRIAA 410


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 510
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 422
Length adjustment: 31
Effective length of query: 369
Effective length of database: 391
Effective search space:   144279
Effective search space used:   144279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_041101760.1 SUTH_RS05540 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.5402.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5402.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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