Alignments for a candidate for argI in Sulfuritalea hydrogenivorans DSM 22779

Align Ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_041097709.1 SUTH_RS05535 ornithine carbamoyltransferase

Query= reanno::HerbieS:HSERO_RS07185
         (304 letters)



>NCBI__GCF_000828635.1:WP_041097709.1
          Length = 307

 Score =  426 bits (1094), Expect = e-124
 Identities = 208/302 (68%), Positives = 249/302 (82%), Gaps = 1/302 (0%)

Query: 2   AIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFE 61
           A +H+LQ  D + DE ++V ER+R IK +FK Y+ +  L DRTLVM+FEK STRTRLSFE
Sbjct: 3   APRHFLQLKDLSRDELDHVFERTRSIKARFKAYQRYWPLQDRTLVMIFEKASTRTRLSFE 62

Query: 62  AGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVP 121
           AGM Q+GG+AIYLNTRDSQLGRGEPVEDAAQV+SRM D++MIRT+ QEIIERFA HSRVP
Sbjct: 63  AGMQQLGGSAIYLNTRDSQLGRGEPVEDAAQVISRMSDIVMIRTFEQEIIERFAGHSRVP 122

Query: 122 VINGLTNEQHPCQVLADVFTYIEHHGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNVS 181
           VINGLTNE HPCQ+LAD+FT+IE  G IQG+ VAW+GD+NN+  +WLQAAEVF F+V+VS
Sbjct: 123 VINGLTNEYHPCQILADIFTFIEQRGPIQGRTVAWIGDSNNVCNTWLQAAEVFDFNVHVS 182

Query: 182 TPKGYDIDPAQVS-PGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGW 240
           TP GY+++P +    G  ++  FADP DA + ADLVTTDVWTSMGFEAEN+ RL+ F  W
Sbjct: 183 TPPGYEVEPERAGLYGTGHFEEFADPMDAARGADLVTTDVWTSMGFEAENDERLRDFADW 242

Query: 241 IVDQAKMARAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVH 300
            VD   M  AK +A+FMHCLPAHRGEEVAAEVIDG QSVVW+EAENRLHVQKAL+E+L+ 
Sbjct: 243 QVDADMMHAAKPEAVFMHCLPAHRGEEVAAEVIDGAQSVVWDEAENRLHVQKALMEFLLL 302

Query: 301 GR 302
           GR
Sbjct: 303 GR 304


Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 347
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 307
Length adjustment: 27
Effective length of query: 277
Effective length of database: 280
Effective search space:    77560
Effective search space used:    77560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_041097709.1 SUTH_RS05535 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.27191.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27191.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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