Alignments for a candidate for carA in Sulfuritalea hydrogenivorans DSM 22779

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_041098069.1 SUTH_RS06645 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000828635.1:WP_041098069.1
          Length = 376

 Score =  524 bits (1349), Expect = e-153
 Identities = 249/368 (67%), Positives = 303/368 (82%), Gaps = 3/368 (0%)

Query: 5   ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
           ALL L DGT F G+ IGA GS+VGEVVFNT+++GYQEILTDPSY RQIVTLTYPHIG+ G
Sbjct: 7   ALLALADGTVFRGKGIGANGSSVGEVVFNTALSGYQEILTDPSYCRQIVTLTYPHIGSYG 66

Query: 65  TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124
            N  D ES+++HA GLVIRDLPL+ASNFR+ + L +YL+  N++ +ADIDTRKLTR+LRE
Sbjct: 67  VNREDCESARIHAAGLVIRDLPLLASNFRSEQTLDAYLRAENVLGLADIDTRKLTRVLRE 126

Query: 125 KGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEA 184
           KGAQ GC++AG++ +A  A+ KARAFPGL GMDLA+ V+  ++Y+W++G W L  G  + 
Sbjct: 127 KGAQAGCLMAGEHLNADDAVAKARAFPGLAGMDLAQVVSARQSYAWSEGEWKLGAGFVQP 186

Query: 185 KKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGD 244
              D   FHVVAYDFG KRNILRML  RGCRLT+VPA+T A +VL +NPDG+FLSNGPGD
Sbjct: 187 ---DNFRFHVVAYDFGVKRNILRMLASRGCRLTVVPAKTPAAEVLALNPDGVFLSNGPGD 243

Query: 245 PAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNV 304
           P PCDYA+ AI++FL+  +P+FGICLGHQL+ALASG KT+KMKFGHHG NHPVKD+E   
Sbjct: 244 PEPCDYAVAAIREFLDRRLPLFGICLGHQLMALASGGKTLKMKFGHHGANHPVKDLETGQ 303

Query: 305 VMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAA 364
           V+IT+QNHGFA D ATLPAN++VTH SLFDG+LQG+  TD+PAF FQGHPEASPGPHD A
Sbjct: 304 VLITSQNHGFAADPATLPANVKVTHVSLFDGSLQGMAWTDRPAFCFQGHPEASPGPHDVA 363

Query: 365 PLFDHFIE 372
            LFD FI+
Sbjct: 364 YLFDRFIQ 371


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 511
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 376
Length adjustment: 30
Effective length of query: 352
Effective length of database: 346
Effective search space:   121792
Effective search space used:   121792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_041098069.1 SUTH_RS06645 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.7747.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7747.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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