Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_041098073.1 SUTH_RS06655 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000828635.1:WP_041098073.1
Length = 1081
Score = 1463 bits (3788), Expect = 0.0
Identities = 757/1087 (69%), Positives = 866/1087 (79%), Gaps = 21/1087 (1%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKR+DI SILI+GAGPI+IGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDP
Sbjct: 1 MPKRSDIHSILIIGAGPIIIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPGT 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
AD TYIEPI W V+ II KERPDAVLPTMGGQTALNCAL+L + GVLE++GV MIGA+
Sbjct: 61 ADVTYIEPITWRVLENIIAKERPDAVLPTMGGQTALNCALDLAKHGVLEKYGVEMIGASR 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AID AEDR +F AM +IGL +ARSGIAH+MEEA V +GFP IIRPSFTMGGSGGG
Sbjct: 121 EAIDMAEDREKFKQAMTRIGLGSARSGIAHSMEEAQQVQGAMGFPTIIRPSFTMGGSGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYN+EEF EIC RGL+ SPTKELLI+ESL+GWKEYEMEVVRD+ DNCIIVCSIEN D M
Sbjct: 181 IAYNQEEFAEICKRGLEASPTKELLIEESLLGWKEYEMEVVRDRKDNCIIVCSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTD+EYQIMRNAS+AVLREIGV+TGGSNVQFA+NPK G ++VIEM
Sbjct: 241 GVHTGDSITVAPAQTLTDREYQIMRNASIAVLREIGVDTGGSNVQFAINPKTGAMVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL NDITGG TPASFEPSIDYVVTK+P
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNDITGGATPASFEPSIDYVVTKVP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF ANDRLTTQMKSVGEVMAIGR+ QES+QKALRGLEV GFD ++ D E
Sbjct: 361 RFAFEKFPQANDRLTTQMKSVGEVMAIGRSFQESMQKALRGLEVSVYGFD-EIEADREE- 418
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
I REL G RIWY+A AFR G ++ F+LT ID WFLVQIE+++ E +
Sbjct: 419 ---INRELASPGPQRIWYLAQAFREGYTLQQAFDLTKIDPWFLVQIEDIITTEGWMRSQN 475
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVR---------EAEIRKLRDQYDLHPVYKRVDT 531
+ L+A LR LKRKGF+D R+ L E +R+LR + PVYKRVDT
Sbjct: 476 LADLDAATLRNLKRKGFSDRRIGTLVSATHDPAAGASGETAVRELRHALGIRPVYKRVDT 535
Query: 532 CAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE 591
CAAEF+T TAYMYSTYEEECEA P T ++KIMVLGGGPNRIGQGIEFDYCCVHA+LA+RE
Sbjct: 536 CAAEFSTSTAYMYSTYEEECEARP-TAKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRE 594
Query: 592 DGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLA 651
DGYETIMVNCNPETVSTDYDTSDRLYFEPVTLED+LEIV +E+P GVIVQ+GGQTPLK A
Sbjct: 595 DGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDILEIVHVEQPTGVIVQFGGQTPLKRA 654
Query: 652 RALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYP 711
R LEA GVP+IGTSPD ID AEDRERFQ + L LKQP N T A+ A EIGYP
Sbjct: 655 RELEANGVPIIGTSPDMIDAAEDRERFQKLLHDLGLKQPPNRTARTEPDAIRLAAEIGYP 714
Query: 712 LVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE 771
LVVRPSYVLGGRAMEIV+++ DL RY + A+ VS +PVLLD FL+DA EVDVDA+ DG
Sbjct: 715 LVVRPSYVLGGRAMEIVHEQKDLERYMRDAIKVSFASPVLLDRFLNDATEVDVDALSDGT 774
Query: 772 MVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFA 831
VLIGGIMEHIEQAGVHSGDSACSLP +TLS+EIQD +R+Q + +A L V GLMNVQFA
Sbjct: 775 QVLIGGIMEHIEQAGVHSGDSACSLPPFTLSREIQDELRRQTEMMAKGLNVVGLMNVQFA 834
Query: 832 VKNN----EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPY 887
++ + VY++EVNPRA+RTVPFVSKAT +PLAK+AAR MAG+SLA+QGVT E+IPPY
Sbjct: 835 IQGSGADAVVYVLEVNPRASRTVPFVSKATSLPLAKIAARCMAGRSLADQGVTGEIIPPY 894
Query: 888 YSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALL 947
+SVKE V PF KFPGVD +LGPEM+STGEVMGVGRTF EAF K+QL + + + K G+ +
Sbjct: 895 FSVKEAVFPFIKFPGVDTILGPEMKSTGEVMGVGRTFGEAFVKSQLAAGTRLPKSGKVFI 954
Query: 948 SVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKN 1007
SV+ D+ + VD+A +L + GF L AT GT + AGI +VNKV EGRPHI D IKN
Sbjct: 955 SVKPADRAKAVDVARELHELGFSLVATRGTGGAIEAAGIPVGMVNKVTEGRPHIVDMIKN 1014
Query: 1008 GEYTYIINTTSGRR-AIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQ 1066
GE I+NT +R AI DSR IR SAL KV TT+ G A + D E S+Q
Sbjct: 1015 GEIVLIVNTVEEKRTAIADSRSIRTSALGAKVTLFTTIEGARAACAGMRHDGLE-TYSLQ 1073
Query: 1067 EMHAQIK 1073
+HA++K
Sbjct: 1074 ALHAELK 1080
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3103
Number of extensions: 122
Number of successful extensions: 16
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1081
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1035
Effective search space: 1062945
Effective search space used: 1062945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_041098073.1 SUTH_RS06655 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.27339.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27339.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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