Alignments for a candidate for gatA in Sulfuritalea hydrogenivorans DSM 22779

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_171817411.1 SUTH_RS01140 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000828635.1:WP_171817411.1
          Length = 487

 Score =  469 bits (1206), Expect = e-136
 Identities = 238/484 (49%), Positives = 328/484 (67%), Gaps = 2/484 (0%)

Query: 3   LFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAV 62
           + +  + EL   +  K++   +L      RI+  +  + AF+ LD ++  A A+  D  V
Sbjct: 1   MINSSLRELSAALAAKKVSAVELASLFLDRIETFNPALNAFITLDRDKTLAQARAADAKV 60

Query: 63  D-GRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGK 121
             G + +  L G+P+  KD   T+G RT+C S++L NF   YDA VV++L  A  VT+GK
Sbjct: 61  GAGGTANSPLCGIPLAHKDIFCTQGWRTSCGSQMLANFVSPYDANVVEKLAAAGMVTLGK 120

Query: 122 LNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQ 181
           LNMDEFAMGSS E S +   KNPW++  VPGGSSGGSAAA+AA   P + G+DTGGSIRQ
Sbjct: 121 LNMDEFAMGSSNETSYFGPVKNPWDVSRVPGGSSGGSAAAIAARLTPAATGTDTGGSIRQ 180

Query: 182 PASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSA 241
           PA+ CG+ GLKPTYG VSRYG++AFASSLDQ GP+ ++ +D A LL A++G D  DSTS 
Sbjct: 181 PAALCGLTGLKPTYGVVSRYGMIAFASSLDQGGPMAKSADDCALLLNAMAGFDPRDSTSL 240

Query: 242 NVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPH 301
                D+   L   + GL+I +P+E+ G+G+  + R +V AAL     LGAT  EV LP+
Sbjct: 241 ERPAEDYGRDLEKPLAGLRIGLPREFFGDGMDADVRAAVEAALAEYRKLGATTVEVQLPN 300

Query: 302 SKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIML 361
           S  ++  YY+++ +EAS+NL+RFDG+RYGYR    D+L ++Y ++RA+GFG EVKRRI++
Sbjct: 301 SGLSVPAYYVIAPAEASSNLSRFDGVRYGYRAPEYDDLTEMYSRSRAQGFGAEVKRRILI 360

Query: 362 GTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTM 421
           GT+ LS GYYDAYY KAQK+R LI  DF + F+  DVI+GPT+P+ AF  G  + DP+ M
Sbjct: 361 GTYVLSHGYYDAYYLKAQKIRRLIAADFVEAFKACDVIMGPTSPSVAFAFGAKSADPVQM 420

Query: 422 YANDILTIPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVAHAFEQATDHHK 480
           Y +DI TI  NLAG+PG+S+PCG  A+ +P+GLQIIG    E+ +  VAH +++ATD H 
Sbjct: 421 YLSDIYTISTNLAGLPGMSLPCGFGANNMPVGLQIIGNWLGEAKMLNVAHQYQKATDWHT 480

Query: 481 AKPE 484
             PE
Sbjct: 481 RMPE 484


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 561
Number of extensions: 20
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 487
Length adjustment: 34
Effective length of query: 451
Effective length of database: 453
Effective search space:   204303
Effective search space used:   204303
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_171817411.1 SUTH_RS01140 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.23645.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23645.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.