Alignments for a candidate for gatB in Sulfuritalea hydrogenivorans DSM 22779

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate WP_041096419.1 SUTH_RS01135 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= metacyc::MONOMER-13956
         (476 letters)



>NCBI__GCF_000828635.1:WP_041096419.1
          Length = 493

 Score =  424 bits (1090), Expect = e-123
 Identities = 227/486 (46%), Positives = 317/486 (65%), Gaps = 15/486 (3%)

Query: 3   FETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAMKA 62
           +E VIGLE HV+L+TKSKIFS S   FGA  N Q S +D+  PGVLPVLN+EAV  A+K 
Sbjct: 7   WEVVIGLETHVQLQTKSKIFSGSSIAFGAAPNVQASAVDIALPGVLPVLNREAVVCAIKF 66

Query: 63  AMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEVGG----------- 111
            +A+  +IA  + F RKNYFYPD PK YQISQF+ P+   G + I VG            
Sbjct: 67  GLAVGAQIAPRSIFARKNYFYPDLPKGYQISQFEIPVVLGGGLAITVGAGDEPKGVQSKA 126

Query: 112 KTKRIGITRLHLEEDAGKLTHTG-DGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEK 170
             K + +TR HLEEDAGK  H    G + +D NR GTPL+EIV+EP++R+  EA AY + 
Sbjct: 127 TEKFVHLTRAHLEEDAGKSLHEDFHGRTGIDLNRAGTPLLEIVTEPEMRSSAEAVAYAKA 186

Query: 171 LKSIIQYTGVSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEK 230
           L +++Q+ G+ D  M+EGS RCDAN+S+RP+GQ+EFGT+ E+KNLNSF F+Q+ ++ E +
Sbjct: 187 LHALVQWIGICDGNMQEGSFRCDANVSVRPMGQKEFGTRREIKNLNSFRFMQQAIDFEVQ 246

Query: 231 RQEQVLLSGFFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVK 290
            Q   +  G  IQQ T  +D  T +T  MR KE + DYRYFP+PDL+ L I  EW   VK
Sbjct: 247 WQINEIEEGRAIQQATVLFDPDTGETRSMRSKEDAHDYRYFPDPDLLPLEIRPEWIAEVK 306

Query: 291 ASIPELPDERRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQKG--AEAKQASNWLMGE 348
           + +PELP   ++R+  E G +AYDA +LT ++ MAD++   V     A  K  +NW+MGE
Sbjct: 307 SGMPELPQAMQQRFQAEYGLSAYDAAILTASRAMADYYVAAVADAGPANGKAVANWIMGE 366

Query: 349 VSAYLNAEQKELADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIE-KGGDAEKIVKE 407
           +SA LN     +    ++   +AG++  I   TIS+ IAKKVF+ L   +G  A++I+++
Sbjct: 367 LSARLNKNDMAVEASPISAAQIAGLVLRIADNTISNNIAKKVFEALWNGEGNSADEIIEK 426

Query: 408 KGLVQISDEGVLLKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNK 467
           +GL QI+D G +  LV E L  N +S+E+F+ GK++A   LVGQ MKA+KG+ANP  V  
Sbjct: 427 QGLKQITDTGAIEALVDEVLAANQKSVEEFRAGKEKAFNALVGQAMKATKGKANPQQVTD 486

Query: 468 ILLEEI 473
           +L +++
Sbjct: 487 LLKKKL 492


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 572
Number of extensions: 13
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 493
Length adjustment: 34
Effective length of query: 442
Effective length of database: 459
Effective search space:   202878
Effective search space used:   202878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate WP_041096419.1 SUTH_RS01135 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.22764.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22764.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.