Alignments for a candidate for aroA in Sulfuritalea hydrogenivorans DSM 22779

Align 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (characterized)
to candidate WP_041098938.1 SUTH_RS09865 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase

Query= BRENDA::Q9KRB0
         (426 letters)



>NCBI__GCF_000828635.1:WP_041098938.1
          Length = 645

 Score =  470 bits (1210), Expect = e-137
 Identities = 250/430 (58%), Positives = 308/430 (71%), Gaps = 7/430 (1%)

Query: 1   MESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKL 60
           M+SL L P+   SG V LPGSKS+SNR LLLAALA G+T + +LLDSDD R ML AL K+
Sbjct: 1   MDSLHLPPLREASGNVRLPGSKSISNRMLLLAALAEGSTEIRDLLDSDDTRVMLAALGKV 60

Query: 61  GVNYRLSADKTTCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPR 120
           GV    +       VEG    F   +  +LF+GNAGTA+RPL AAL L  G Y L+G PR
Sbjct: 61  GVGVT-ALGCNAWRVEGCDGVF-PVKDADLFMGNAGTAIRPLTAALALSGGHYRLSGVPR 118

Query: 121 MKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGT-VTIDGSISSQFLTAFLM 179
           M ERPIG LVD LRQ GA I Y  +  FPPL I    ++  T + + G +SSQFLTA LM
Sbjct: 119 MHERPIGDLVDGLRQIGADIRYTGKPGFPPLAIHPAHVKLATPIRLRGDVSSQFLTALLM 178

Query: 180 SAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYVSPGQFL 239
           + PL   +  I++  EL+SKPYI+ITL++M +FGV+V    +Q F IPA Q Y SPG   
Sbjct: 179 ALPLTGAEAVIEMTTELISKPYIEITLNLMARFGVKVQREGWQRFTIPAAQRYRSPGVLH 238

Query: 240 VEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIAR- 298
           VEGDAS+ASYFLAA AI GG V+V G+G++SIQGD++FADAL+ MGA I WG  ++ AR 
Sbjct: 239 VEGDASAASYFLAAGAIGGGPVRVEGVGRDSIQGDVRFADALKAMGAHIAWGGQHIEARA 298

Query: 299 --RGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKV 356
              G+L A DLD NHIPDAAMT+A  ALFA G   +RN+ +WRVKETDR+AAMATELRK+
Sbjct: 299 PESGKLKAFDLDLNHIPDAAMTLAVAALFADGRCVLRNIASWRVKETDRIAAMATELRKL 358

Query: 357 GATVEEGEDFIVITP-PTKLIHAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFP 415
           GA+VEEG D+I ++P PT + +AAIDTYDDHRMAMCF+L AL   PVTINDP C +KTFP
Sbjct: 359 GASVEEGTDYIAVSPAPTLVSNAAIDTYDDHRMAMCFALAALGGVPVTINDPYCVNKTFP 418

Query: 416 DYFDKFAQLS 425
           DYFD  A+++
Sbjct: 419 DYFDALAEIT 428


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 635
Number of extensions: 24
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 645
Length adjustment: 35
Effective length of query: 391
Effective length of database: 610
Effective search space:   238510
Effective search space used:   238510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_041098938.1 SUTH_RS09865 (bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.4012.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4012.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.