Alignments for a candidate for aroB in Sulfuritalea hydrogenivorans DSM 22779

Align 3-dehydroquinate synthase (EC 4.2.3.4) (characterized)
to candidate WP_041096957.1 SUTH_RS02935 3-dehydroquinate synthase

Query= BRENDA::P07639
         (362 letters)



>NCBI__GCF_000828635.1:WP_041096957.1
          Length = 364

 Score =  390 bits (1002), Expect = e-113
 Identities = 206/362 (56%), Positives = 253/362 (69%), Gaps = 4/362 (1%)

Query: 1   MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQA 60
           M R+ + L ERSYPI I  GL +     LP     ++ LV+N T+APLY+D +   LE+ 
Sbjct: 1   MRRLNLDLAERSYPILIDGGLLSRAEEILPFLRTPRIALVSNTTVAPLYMDGLVKALEKV 60

Query: 61  GVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQR 120
           GV V  +ILPDGE YK+   L+ ++  LL     R TT+VALGGGV+GDL GFAAA+YQR
Sbjct: 61  GVGVTPIILPDGEAYKTWESLNQIYDVLLATRCDRSTTIVALGGGVIGDLAGFAAATYQR 120

Query: 121 GVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELAS 180
           GV FIQ+PTTLLSQVDSSVGGKT +NHP GKNM+GAF+QP  V+ D D LKTLP REL++
Sbjct: 121 GVPFIQIPTTLLSQVDSSVGGKTGINHPRGKNMVGAFWQPKLVLADTDTLKTLPDRELSA 180

Query: 181 GLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERET--- 237
           G+AEVIKYG+I D  F +WLE N+D LL  DG  +A+ I R C  KAEVVAADE ET   
Sbjct: 181 GMAEVIKYGLIRDLPFLDWLEANMDGLLARDGELLAHAIERSCINKAEVVAADELETARE 240

Query: 238 GLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLL 297
           G RALLNLGHTFGHAIE  MGYG WLHGEAVAAG +MA   S RLG    A+ +R+ TLL
Sbjct: 241 GGRALLNLGHTFGHAIETGMGYGEWLHGEAVAAGTMMAVELSRRLGWLCVADVERVRTLL 300

Query: 298 KRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLNAIA 357
           +RAGLPV G  ++ A  YL  M  DKKV+AG +RL+L  ++G +   +  S E ++ AI 
Sbjct: 301 QRAGLPVKG-ADLGAARYLELMSHDKKVIAGSLRLVLLKSLGDAVTHADASREDIVAAIE 359

Query: 358 DC 359
            C
Sbjct: 360 AC 361


Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 331
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 364
Length adjustment: 29
Effective length of query: 333
Effective length of database: 335
Effective search space:   111555
Effective search space used:   111555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_041096957.1 SUTH_RS02935 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.9434.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9434.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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