Alignments for a candidate for aroC in Sulfuritalea hydrogenivorans DSM 22779

Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 (characterized)
to candidate WP_041097992.1 SUTH_RS06415 chorismate synthase

Query= SwissProt::P12008
         (361 letters)



>NCBI__GCF_000828635.1:WP_041097992.1
          Length = 368

 Score =  463 bits (1192), Expect = e-135
 Identities = 225/360 (62%), Positives = 287/360 (79%)

Query: 1   MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR 60
           M+GNT G LFRVT+FGESHG A+GC+VDG PPG+ ++ A++Q +LDRR+PGTSR+ TQRR
Sbjct: 1   MSGNTFGSLFRVTSFGESHGPAIGCVVDGCPPGMEISAAEIQLELDRRKPGTSRHVTQRR 60

Query: 61  EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY 120
           E D V+ILSGVFEG TTG  IGLLI N DQRS+DY  I + FRPGHADYTY QKYG+RD+
Sbjct: 61  ESDTVEILSGVFEGRTTGAPIGLLIRNEDQRSKDYGNIAETFRPGHADYTYWQKYGIRDH 120

Query: 121 RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC 180
           RGGGRSSARETA+RVAAGAIA+K+L +++G+ +RG ++++G I +  +D + ++ NPFF 
Sbjct: 121 RGGGRSSARETAVRVAAGAIARKWLQQRYGVTVRGWMSRLGSIDIPWQDEAAIDTNPFFV 180

Query: 181 PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV 240
            + + +  L++ M AL+K GDSIGA++TVVA GVP G G+PV+DR+DADIA+A+M INAV
Sbjct: 181 ANAEIVPQLEDYMDALRKSGDSIGAEITVVARGVPVGWGDPVYDRIDADIAYAMMGINAV 240

Query: 241 KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV 300
           KGVEIG GF  V  +GS++ DE+T +GF  N+AGGILGGIS+GQ ++  MA+KPTSSI +
Sbjct: 241 KGVEIGAGFASVTQKGSEHGDELTPEGFLGNNAGGILGGISTGQDVVVRMAVKPTSSIRL 300

Query: 301 PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIPR 360
           P RTIN  GE   + T GRHDPCVGIRA PIAEAMLA+VL+D  L  RAQ ADV+   PR
Sbjct: 301 PRRTINLAGEPAMIETHGRHDPCVGIRATPIAEAMLALVLIDAALHHRAQCADVECTTPR 360


Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 439
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 368
Length adjustment: 29
Effective length of query: 332
Effective length of database: 339
Effective search space:   112548
Effective search space used:   112548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_041097992.1 SUTH_RS06415 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.21098.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21098.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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