Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate WP_041100831.1 SUTH_RS16595 type II 3-dehydroquinate dehydratase
Query= BRENDA::O30557
(147 letters)
>NCBI__GCF_000828635.1:WP_041100831.1
Length = 162
Score = 197 bits (500), Expect = 8e-56
Identities = 100/142 (70%), Positives = 115/142 (80%)
Query: 4 LLVLHGPNLNLLGTREPGTYGSTTLGQINQDLERRAREAGHHLLHLQSNAEYELIDRIHA 63
+LVLHGPNLNLLGTREP YG TTL I++ +E RAR G L QSN E ELIDR+ +
Sbjct: 19 VLVLHGPNLNLLGTREPEIYGRTTLASIHKAMEARARSFGVRLESFQSNHEGELIDRVQS 78
Query: 64 ARDEGVDFIIINPAAFTHTSVALRDALLAVSIPFIEVHLSNVHKREPFRHHSYFSDVAVG 123
AR++GV FIIINPA +THTSVALRDAL AV+IPFIEVHLSNVH RE FR HSYFSD+AVG
Sbjct: 79 AREQGVRFIIINPAGYTHTSVALRDALAAVAIPFIEVHLSNVHGREEFRRHSYFSDIAVG 138
Query: 124 VICGLGATGYRLALESALEQLQ 145
V+ GLGA GY LALE+AL +L+
Sbjct: 139 VVSGLGAQGYELALEAALARLR 160
Lambda K H
0.322 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 162
Length adjustment: 17
Effective length of query: 130
Effective length of database: 145
Effective search space: 18850
Effective search space used: 18850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)
Align candidate WP_041100831.1 SUTH_RS16595 (type II 3-dehydroquinate dehydratase)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.31198.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31198.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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