Alignments for a candidate for aroE in Sulfuritalea hydrogenivorans DSM 22779

Align shikimate dehydrogenase (NADP+) (EC 1.1.1.25) (characterized)
to candidate WP_041100957.1 SUTH_RS16995 shikimate dehydrogenase

Query= BRENDA::Q88RQ5
         (274 letters)



>NCBI__GCF_000828635.1:WP_041100957.1
          Length = 278

 Score =  263 bits (672), Expect = 3e-75
 Identities = 158/278 (56%), Positives = 181/278 (65%), Gaps = 15/278 (5%)

Query: 2   DQYVVFGNPIGHSKSPLIHRLFAEQTGQDLEYATLLAPLDEFSDCARGFFKQGS----GG 57
           D+Y VFGNPIGHSKSP IH LFA QTGQD+ Y  +L     F      F    +    G 
Sbjct: 3   DRYAVFGNPIGHSKSPRIHALFAAQTGQDISYEAILVERGSFPAAVDAFMAADTAPARGA 62

Query: 58  NVTVPFKEEAFRLCDSLTPRARRAGAVNTLSKLADGTLQGDNTDGAGLVRDLTVNAGVEL 117
           NVTVPFKEEAFRL    TPRA  AGAVNTLS  A G + GDNTDGAGLVRDL  N G + 
Sbjct: 63  NVTVPFKEEAFRLATRRTPRAEAAGAVNTLSFDA-GAIIGDNTDGAGLVRDLKHNLGCDP 121

Query: 118 AGKRILILGAGGAVRGVLEPILAHKPQSLVIANRTVEKAEQLAREFDELGPVVAS----- 172
           AG+RIL+LGAGGA RGV+ P+L   P  LVIANRT E A +LA EF  L     S     
Sbjct: 122 AGRRILLLGAGGAARGVILPLLLENPAELVIANRTEETAARLALEFGRLPGCAVSVKPDG 181

Query: 173 -GFAWLQ-EPVDVIINATSASLAGELPPIADSLVEAGRTVCYDMMYGKEPTPFCQWATKL 230
            GFA L     D++INATSA L+G + P+  + V A R V Y+M+YG+  TPF   A   
Sbjct: 182 IGFAGLAGRAFDLVINATSAGLSGAVLPL-PTAVFAPRCVAYEMVYGR-ATPFMNQARAA 239

Query: 231 GAAKVLDGLGMLAEQAAEAFFIWRGVRPDTAPVLAELR 268
           G A+V DGLGML EQAAEAFF+WRGVRP TA VLA L+
Sbjct: 240 G-ARVADGLGMLVEQAAEAFFVWRGVRPRTASVLAALK 276


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 258
Number of extensions: 13
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 278
Length adjustment: 25
Effective length of query: 249
Effective length of database: 253
Effective search space:    62997
Effective search space used:    62997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_041100957.1 SUTH_RS16995 (shikimate dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.11612.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11612.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.