Alignments for a candidate for aroG in Sulfuritalea hydrogenivorans DSM 22779

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_041098607.1 SUTH_RS08675 3-deoxy-7-phosphoheptulonate synthase

Query= BRENDA::P00888
         (356 letters)



>NCBI__GCF_000828635.1:WP_041098607.1
          Length = 360

 Score =  363 bits (933), Expect = e-105
 Identities = 187/350 (53%), Positives = 238/350 (68%), Gaps = 5/350 (1%)

Query: 8   NVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCGPCSIHDP 67
           N++I   + + TPE++ A  PLS      +   R+++  I+ G DPR+ VV GPCSIHDP
Sbjct: 6   NLNIEAFEPMPTPEEIHARVPLSDAAAESVLAGRRTLERILDGTDPRVFVVVGPCSIHDP 65

Query: 68  ETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDVEAGLQIA 127
              L+YARR K LA EV+ ++ LVMRVYFEKPRT  GWKG INDP MD SF +E G+Q A
Sbjct: 66  VAGLDYARRLKKLADEVAGTMLLVMRVYFEKPRTATGWKGYINDPRMDDSFHIEEGMQKA 125

Query: 128 RKLLLELVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFK 187
           R+ LL +  +GLP ATEALDP  PQYLGDL +W AIGART+ESQTHREM+SGLS PVGFK
Sbjct: 126 REFLLAVNEIGLPAATEALDPIGPQYLGDLIAWVAIGARTSESQTHREMSSGLSAPVGFK 185

Query: 188 NGTDGSLATAINAMRAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGGKA-PNYSPAD 246
           NGTDGSL  A+NA+ +A+  H F+GIN  G+ ++++T GN  GH++LRGG   PNY    
Sbjct: 186 NGTDGSLDAAVNAIISASSQHSFLGINMQGRSSVVRTAGNRYGHLVLRGGGGRPNYDTVS 245

Query: 247 VAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVVAQIKD----GNRSIIGLMI 302
           VA  E  +++A L  +++VDCSH NS K    QP V    + QI D    G+RSI+GLMI
Sbjct: 246 VALAEAALDKAKLPHNIVVDCSHANSYKKPELQPLVMHDCINQIADQRKAGHRSIVGLMI 305

Query: 303 ESNIHEGNQSSEQPRSEMKYGVSVTDACISWEMTDALLREIHQDLNGQLT 352
           ES I  GNQ      S++KYG SVTDAC+ W  T+ +LRE    L G +T
Sbjct: 306 ESFIEAGNQPIPADLSQLKYGCSVTDACVDWATTEKMLREADAALRGVIT 355


Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 407
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 360
Length adjustment: 29
Effective length of query: 327
Effective length of database: 331
Effective search space:   108237
Effective search space used:   108237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_041098607.1 SUTH_RS08675 (3-deoxy-7-phosphoheptulonate synthase)
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.17994.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17994.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.