Alignments for a candidate for aroG in Sulfuritalea hydrogenivorans DSM 22779

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_041100320.1 SUTH_RS14770 3-deoxy-7-phosphoheptulonate synthase AroG

Query= BRENDA::C3TIE2
         (350 letters)



>NCBI__GCF_000828635.1:WP_041100320.1
          Length = 355

 Score =  468 bits (1204), Expect = e-136
 Identities = 235/349 (67%), Positives = 271/349 (77%)

Query: 1   MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIHKILKGNDDRLLVVIGP 60
           M +  DD+RI+EIKEL PP  +L +FP T+ AA T   AR+A+H++L G D RL+VV+GP
Sbjct: 1   MKHITDDVRIREIKELSPPGHILREFPTTDKAAETTYEARQAVHRVLHGADGRLVVVVGP 60

Query: 61  CSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQIN 120
           CSIHD  AA EYA RL        D+L I+MRVYFEKPRTTVGWKGLINDP MD SF+IN
Sbjct: 61  CSIHDYDAAMEYARRLRQEAARFADDLLILMRVYFEKPRTTVGWKGLINDPRMDGSFRIN 120

Query: 121 DGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLS 180
           DGLR+ARKLL +IN+ GLP   EFLD ITPQY ADL+SWGAIGARTTESQVHRELASGLS
Sbjct: 121 DGLRLARKLLWEINELGLPCGTEFLDTITPQYTADLISWGAIGARTTESQVHRELASGLS 180

Query: 181 CPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPN 240
           CPVGFKNGTDG I++A+DAI AA +PH FLSVTK GHSAIV+T+GN DCH+ILRGGK  N
Sbjct: 181 CPVGFKNGTDGNIRIAVDAIKAAASPHHFLSVTKAGHSAIVSTNGNEDCHVILRGGKTTN 240

Query: 241 YSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGVM 300
           Y A  V      L KAGL A+VMIDFSHANSSKQFK+Q+DV  DV  Q+A G+  I GVM
Sbjct: 241 YDAASVDAACTELGKAGLAARVMIDFSHANSSKQFKRQIDVARDVGAQMAAGDDRIFGVM 300

Query: 301 VESHLVEGNQSLESGEPLAYGKSITDACIGWEDTDALLRQLANAVKARR 349
           +ESHL EG Q L  G+PL YG S+TDAC+GW+DT   L  LA AVKARR
Sbjct: 301 IESHLNEGRQDLAPGKPLEYGVSVTDACLGWDDTVLALDILAKAVKARR 349


Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 441
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 355
Length adjustment: 29
Effective length of query: 321
Effective length of database: 326
Effective search space:   104646
Effective search space used:   104646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_041100320.1 SUTH_RS14770 (3-deoxy-7-phosphoheptulonate synthase AroG)
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.21447.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21447.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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