Alignments for a candidate for cysK in Sulfuritalea hydrogenivorans DSM 22779

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_041098341.1 SUTH_RS07735 cysteine synthase A

Query= BRENDA::P9WP55
         (310 letters)



>NCBI__GCF_000828635.1:WP_041098341.1
          Length = 314

 Score =  429 bits (1102), Expect = e-125
 Identities = 213/309 (68%), Positives = 249/309 (80%), Gaps = 4/309 (1%)

Query: 1   MSIAEDITQLIGRTPLVRLRRVTDGA----VADIVAKLEFFNPANSVKDRIGVAMLQAAE 56
           M IA ++ +LIG TPLVRL R+  G        I  KLEFFNPA+SVKDRI VAML AAE
Sbjct: 1   MRIANNVAELIGNTPLVRLNRLNAGKGFENAVTIALKLEFFNPAHSVKDRIAVAMLDAAE 60

Query: 57  QAGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT 116
           +AG +KPD+IILEPTSGNTGI LAMV AARGY+    MPETMS ER+++L+AYGAEL LT
Sbjct: 61  KAGQLKPDSIILEPTSGNTGIGLAMVAAARGYKSAFVMPETMSRERKLMLKAYGAELFLT 120

Query: 117 PGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAG 176
           PG +GM GAI KA ELA  D RYF+PQQFENPANP IHR TTAEE+W DTDGKVDI V+G
Sbjct: 121 PGPEGMPGAIRKANELAAADSRYFIPQQFENPANPEIHRNTTAEEIWHDTDGKVDIFVSG 180

Query: 177 VGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDL 236
           +GTGGTITGV +V+K+RKP  + +AVEP ASPVLSGG +GPHPIQGIGAGFVP +L+  +
Sbjct: 181 IGTGGTITGVGEVLKQRKPGVQIIAVEPDASPVLSGGARGPHPIQGIGAGFVPEILNTKI 240

Query: 237 VDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFG 296
            DE++ V N+DALN AR LA  EGLLVGISSGAA  AAL+VA+RPEN GKL+VV++P FG
Sbjct: 241 YDEVVRVKNDDALNTARSLATTEGLLVGISSGAAVWAALEVAKRPENKGKLVVVIIPSFG 300

Query: 297 ERYLSTPLF 305
           ERYLST L+
Sbjct: 301 ERYLSTVLY 309


Lambda     K      H
   0.318    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 340
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 314
Length adjustment: 27
Effective length of query: 283
Effective length of database: 287
Effective search space:    81221
Effective search space used:    81221
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_041098341.1 SUTH_RS07735 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.18358.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18358.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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