Alignments for a candidate for cysK in Sulfuritalea hydrogenivorans DSM 22779

Align Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 (characterized)
to candidate WP_041098927.1 SUTH_RS09825 cysteine synthase CysM

Query= SwissProt::P16703
         (303 letters)



>NCBI__GCF_000828635.1:WP_041098927.1
          Length = 300

 Score =  372 bits (954), Expect = e-108
 Identities = 190/294 (64%), Positives = 225/294 (76%), Gaps = 4/294 (1%)

Query: 3   TLEQTIGNTPLVKLQRM-GPDNG---SEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEI 58
           TLE  +GNTPLV+L+R+ G +N    + + +KLEGNNPAGSVKDR ALSMIV AE RG I
Sbjct: 5   TLEDFVGNTPLVQLKRIPGTENARRNNAILVKLEGNNPAGSVKDRPALSMIVHAETRGRI 64

Query: 59  KPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQG 118
           KPGD LIEATSGNTGIALAM AA++GYRM L+MP+N S ER   MRA+GAEL+L  K  G
Sbjct: 65  KPGDTLIEATSGNTGIALAMAAAMRGYRMILIMPENQSVERCQTMRAFGAELVLTPKAGG 124

Query: 119 MEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGT 178
           ME ARDLA +M   G+G +LDQF NPDNP AHY  TGPEIW+ TGGRITHFVSSMGTTGT
Sbjct: 125 MEAARDLAEKMVADGKGIVLDQFANPDNPLAHYEGTGPEIWRDTGGRITHFVSSMGTTGT 184

Query: 179 ITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAE 238
           I G SR+ +EQ+  + I+G QPEEGS IPGIR+WP  YLP I+  S VD+V  + Q  AE
Sbjct: 185 IMGCSRYFKEQNPAIRIIGCQPEEGSQIPGIRKWPEAYLPKIYEGSRVDQVEHVSQGQAE 244

Query: 239 NTMRELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAIICDRGDRYLSTGVF 292
              R LA  EGIF G+SSGG++  ALR+A    +AV+V+I+CDRGDRYLSTGVF
Sbjct: 245 EMARRLAREEGIFAGISSGGSLVVALRIADQVENAVIVSIVCDRGDRYLSTGVF 298


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 357
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 300
Length adjustment: 27
Effective length of query: 276
Effective length of database: 273
Effective search space:    75348
Effective search space used:    75348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_041098927.1 SUTH_RS09825 (cysteine synthase CysM)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.27134.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27134.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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