Alignments for a candidate for glnA in Sulfuritalea hydrogenivorans DSM 22779

Align glutamate--ammonia ligase; EC 6.3.1.2 (characterized)
to candidate WP_041096173.1 SUTH_RS00250 type I glutamate--ammonia ligase

Query= CharProtDB::CH_024014
         (469 letters)



>NCBI__GCF_000828635.1:WP_041096173.1
          Length = 469

 Score =  667 bits (1720), Expect = 0.0
 Identities = 314/469 (66%), Positives = 379/469 (80%)

Query: 1   MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG 60
           M+ + VL ++ E EV+FVD RFTDT+GKEQHV +P    + + FE+G  FDGSSI GWKG
Sbjct: 1   MTPQDVLKLVEEKEVRFVDFRFTDTRGKEQHVGVPISAFSMDKFEDGHAFDGSSIAGWKG 60

Query: 61  INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRSTG 120
           I  SDM LMPDA++A IDPFF ++TL++ CD++EP   +GYDRDPRSIAKR E YL+S+G
Sbjct: 61  IQASDMQLMPDANSAYIDPFFDETTLVLTCDVVEPADGKGYDRDPRSIAKRGEAYLKSSG 120

Query: 121 IADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWNSSTQYEGGNKGHRPAVKGGY 180
           I DT  FGPEPEFF+FD I +G  +SG+HV I   E AW+S+ ++E GN GHRP VKGGY
Sbjct: 121 IGDTAYFGPEPEFFIFDSIEWGVDMSGAHVKIYSEEAAWSSAEKFENGNTGHRPTVKGGY 180

Query: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
           FPVPPVDS  D+R++MCL++E  G+ VE HHHEVATAGQNE+ T FNT+ ++AD+ Q+ K
Sbjct: 181 FPVPPVDSFNDMRAQMCLLLEACGVPVEVHHHEVATAGQNEIGTVFNTLVRRADQTQLLK 240

Query: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIG 300
           Y+VHNVAH +GKTATFMPKP+ GDNGSGMH H S+ K+G NLFAG+ YAGLSE ALYYIG
Sbjct: 241 YIVHNVAHSYGKTATFMPKPIVGDNGSGMHVHQSIWKDGKNLFAGNGYAGLSEFALYYIG 300

Query: 301 GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVSSPKARRIEVR 360
           GVIKHA+A+NA+ NP TNSYKRLVPG+EAPV LAYSARNRSASIRIP V S KARRIE R
Sbjct: 301 GVIKHARALNAITNPLTNSYKRLVPGFEAPVKLAYSARNRSASIRIPYVHSDKARRIETR 360

Query: 361 FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN 420
           FPDP ANPYLCF AL+MAGLDG++NKIHPG+  DKNLYDLPPEE  +IP V  SLE+AL 
Sbjct: 361 FPDPGANPYLCFTALMMAGLDGVQNKIHPGDPADKNLYDLPPEEDAKIPTVCSSLEQALE 420

Query: 421 ELDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 469
            LD DREFL  GGVF++E +DAYI L+ EE  + RMT HPVEF++YYS+
Sbjct: 421 YLDKDREFLTRGGVFSNEMLDAYIDLKMEEVTKFRMTTHPVEFDMYYSI 469


Lambda     K      H
   0.318    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 742
Number of extensions: 23
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 469
Length adjustment: 33
Effective length of query: 436
Effective length of database: 436
Effective search space:   190096
Effective search space used:   190096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_041096173.1 SUTH_RS00250 (type I glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.19942.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19942.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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