Alignments for a candidate for hisA in Sulfuritalea hydrogenivorans DSM 22779

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_041100145.1 SUTH_RS14135 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::BFirm:BPHYT_RS17685
         (250 letters)



>NCBI__GCF_000828635.1:WP_041100145.1
          Length = 250

 Score =  394 bits (1013), Expect = e-115
 Identities = 190/250 (76%), Positives = 222/250 (88%)

Query: 1   MLLIPAIDLKDGQCVRLKQGDMDQATIFSEEPAAMARHWVDRGARRLHLVDLNGAFAGKP 60
           MLLIPAIDLKDG CVRLKQG M+ AT+FSE+PAAMARHW+D+GARRLHLVDLNGAFAGKP
Sbjct: 1   MLLIPAIDLKDGHCVRLKQGAMEDATVFSEDPAAMARHWIDQGARRLHLVDLNGAFAGKP 60

Query: 61  KNEDAIRAIIEEVGGEIPVQLGGGIRDLNTIERYLDDGLSYVIIGTAAVKNPGFLQDACT 120
           KNE AI+AI++EVG EIPVQLGGGIRDL+TIER LDDG++YVIIGTAAVKNPGFL DAC 
Sbjct: 61  KNEAAIKAILKEVGDEIPVQLGGGIRDLDTIERCLDDGITYVIIGTAAVKNPGFLHDACG 120

Query: 121 AFGGHIIVGLDAKDGKVATDGWSKLTGHEVADLARKFEDYGCESIIYTDIGRDGMLQGIN 180
           AF GHIIVGLDAKDGKVA DGWSK+TGH+V DLA+KFEDYG E++IYTDIGRDGML G+N
Sbjct: 121 AFPGHIIVGLDAKDGKVAVDGWSKMTGHDVVDLAKKFEDYGVEAVIYTDIGRDGMLSGVN 180

Query: 181 IEATVRLARAVKIPVIASGGLSNLTDIESLCEVEDEGIEGVICGRAIYSGDLDFAAAQTL 240
           IEATV+LA+A++IPVIASGG++++ D+++LC V+ EGI G I GRAIY G LDF  AQ  
Sbjct: 181 IEATVKLAQALRIPVIASGGIASVKDVKALCAVQGEGISGAITGRAIYEGKLDFKKAQAE 240

Query: 241 ADRLRESDDA 250
           AD+L ++  A
Sbjct: 241 ADKLSKAPAA 250


Lambda     K      H
   0.319    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 315
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 250
Length adjustment: 24
Effective length of query: 226
Effective length of database: 226
Effective search space:    51076
Effective search space used:    51076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_041100145.1 SUTH_RS14135 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.20494.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20494.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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