Alignments for a candidate for hisD in Sulfuritalea hydrogenivorans DSM 22779

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_041100155.1 SUTH_RS14175 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_000828635.1:WP_041100155.1
          Length = 431

 Score =  429 bits (1104), Expect = e-125
 Identities = 225/429 (52%), Positives = 294/429 (68%), Gaps = 1/429 (0%)

Query: 1   MVTTLRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRID 60
           M+  L   D  F     A L       + +++ V EI+ RVR EGD+A+L+++RRFD++D
Sbjct: 1   MIRRLSSADSGFAATLDALLHFDHSTDDAIEQTVAEILKRVRTEGDAAVLEFTRRFDQLD 60

Query: 61  LEKTG-IAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGS 119
                 + +  +E+  A D  PA+   AL+ A  R+  +H RQ  +   +T+A G  LG 
Sbjct: 61  AGTMAELELPRSELRRALDGLPAAQRSALEAAAKRVSDYHERQKLESWSFTEADGTRLGQ 120

Query: 120 RWTAIEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLA 179
           + TA++ VGLYVPGG A+YPSSVLMNA+PAKVAGV+ ++MVVP P G  N LVL AA LA
Sbjct: 121 KVTALDRVGLYVPGGKAAYPSSVLMNALPAKVAGVNELIMVVPTPRGEKNALVLAAACLA 180

Query: 180 GVSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEV 239
           GV  ++ +GGAQA+AALAYGT+TI  V KIVGPGNAYVAAAKR VFGTVGIDM+AGPSEV
Sbjct: 181 GVDRVFTIGGAQAVAALAYGTQTIPQVDKIVGPGNAYVAAAKRRVFGTVGIDMVAGPSEV 240

Query: 240 LIVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETAS 299
           LI+AD   NPDW+A DL AQAEHD  AQSIL++ D  F   V  ++E+ L T+ R E  +
Sbjct: 241 LIIADASANPDWVAIDLFAQAEHDELAQSILLSPDADFIARVAASIEKLLPTMPRREVIA 300

Query: 300 ASWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVI 359
           AS +  GA+I V DF++A  LANRIA EHLE+AVAD      +IR+AG+IF+G Y  E +
Sbjct: 301 ASLKGRGALIHVADFDEACALANRIAPEHLELAVADPAPLAEKIRHAGAIFVGHYASESL 360

Query: 360 GDYVGGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDA 419
           GDY  G NHVLPT+RSARFSS L V D+ KR+SL+++     + LGP A  +A  EGL A
Sbjct: 361 GDYCAGPNHVLPTSRSARFSSPLGVYDFQKRSSLIEVSQAGAQTLGPIAATLAHGEGLTA 420

Query: 420 HAQSVAIRL 428
           HA++  +R+
Sbjct: 421 HARAAELRI 429


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 503
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 431
Length adjustment: 32
Effective length of query: 398
Effective length of database: 399
Effective search space:   158802
Effective search space used:   158802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_041100155.1 SUTH_RS14175 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.9376.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9376.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.