Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate WP_041100141.1 SUTH_RS14125 phosphoribosyl-AMP cyclohydrolase
Query= SwissProt::O26347
(138 letters)
>NCBI__GCF_000828635.1:WP_041100141.1
Length = 132
Score = 132 bits (333), Expect = 1e-36
Identities = 69/116 (59%), Positives = 84/116 (72%), Gaps = 3/116 (2%)
Query: 21 EDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVK 80
+ LI A+AQD +TGEVLM A+MNREAL T ETG A YWS SRG+LW KGE SGH QRV
Sbjct: 18 QGLIPAIAQDAKTGEVLMFAWMNREALALTAETGHAVYWSRSRGRLWHKGEESGHTQRVL 77
Query: 81 DVLVDCDGDAVVLKVEQEGG-ACHTGYRSCFYRSIDGDELKVREDAVKVFDPEEIY 135
++ VDCD D V+LK+EQ GG ACHTG RSCF+ ++ + E +K DP+EIY
Sbjct: 78 ELRVDCDQDVVLLKIEQVGGIACHTGRRSCFFNRLETSGWQDVEPVLK--DPKEIY 131
Lambda K H
0.318 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 132
Length adjustment: 15
Effective length of query: 123
Effective length of database: 117
Effective search space: 14391
Effective search space used: 14391
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)
Align candidate WP_041100141.1 SUTH_RS14125 (phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.16217.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16217.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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