Alignments for a candidate for hisF in Sulfuritalea hydrogenivorans DSM 22779

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate WP_041100143.1 SUTH_RS14130 imidazole glycerol phosphate synthase subunit HisF

Query= BRENDA::Q5NMD6
         (255 letters)



>NCBI__GCF_000828635.1:WP_041100143.1
          Length = 252

 Score =  300 bits (768), Expect = 2e-86
 Identities = 150/250 (60%), Positives = 193/250 (77%), Gaps = 1/250 (0%)

Query: 3   LCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGT 62
           L  RIIPCLDV+ GRVVKGVNF +L DAGDPVE A+ YD  GADE+ FLDI+AS + R  
Sbjct: 2   LAKRIIPCLDVSAGRVVKGVNFVELRDAGDPVEIARRYDEQGADEITFLDITASSDDRDI 61

Query: 63  MLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFG 122
           +L +V   A   F+PLTVGGGVRQVED R LL AGADKV++N+AAV  P+LVA+ + + G
Sbjct: 62  ILHIVEAVASQVFIPLTVGGGVRQVEDVRRLLNAGADKVSMNTAAVNNPQLVADASGKVG 121

Query: 123 AQCVVAAIDARRNG-DHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGTRD 181
           +QC+V AIDA++     WEV+THGGR+ TG++A++ A  +  LGAGEILLTSMD+DGT+ 
Sbjct: 122 SQCIVVAIDAKQTSPGKWEVFTHGGRKNTGLDAIEWARKVESLGAGEILLTSMDRDGTKA 181

Query: 182 GYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEAHE 241
           G+DL LTR VAD+V +PVIASGGVG L H+ +GVT+G A A+LAASIFH+G+Y++ +A E
Sbjct: 182 GFDLPLTRAVADAVGIPVIASGGVGTLQHLADGVTEGRADAVLAASIFHYGEYTVRQAKE 241

Query: 242 ALAKAGLTVR 251
            +   G+ VR
Sbjct: 242 FMRSRGIEVR 251


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 238
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 252
Length adjustment: 24
Effective length of query: 231
Effective length of database: 228
Effective search space:    52668
Effective search space used:    52668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_041100143.1 SUTH_RS14130 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.25459.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25459.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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