Alignments for a candidate for hisG in Sulfuritalea hydrogenivorans DSM 22779

Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate WP_041100157.1 SUTH_RS14180 ATP phosphoribosyltransferase

Query= reanno::HerbieS:HSERO_RS20350
         (216 letters)



>NCBI__GCF_000828635.1:WP_041100157.1
          Length = 213

 Score =  321 bits (822), Expect = 7e-93
 Identities = 163/208 (78%), Positives = 182/208 (87%)

Query: 5   LTLALSKGRIFEETLPLLKAAGITVSEDPESSRKLILPTNDPDVRVIIVRASDVPTYVQY 64
           +T+ALSKGRIFEETLPLL AAGI  +EDPE SRKLI+ TN  DVRV+IVRASDVPTYVQY
Sbjct: 4   ITIALSKGRIFEETLPLLAAAGIVPAEDPEKSRKLIIGTNRADVRVVIVRASDVPTYVQY 63

Query: 65  GAADFGVAGKDVLLEHGGEGLYQPIDLNIAKCRLSVAVQEGFDYANAVRQGARLRVVTKY 124
           GAAD G+AGKDVLLEHGG GLYQP+DLNIAKCR+ VA   GFDYA AVR GARLR+ TKY
Sbjct: 64  GAADLGIAGKDVLLEHGGVGLYQPLDLNIAKCRMCVAAPVGFDYAAAVRSGARLRIATKY 123

Query: 125 VNTAREHFAAKGVHVDLIKLYGSMELGPLVGLSDAIVDLVSTGGTLRANKLVEVEHIIDI 184
           +  AREHFAAKGVHVDLIKLYGSMEL PL GL++AIVDLVS+G TL+ANKLVEVE I++I
Sbjct: 124 IAVAREHFAAKGVHVDLIKLYGSMELAPLAGLAEAIVDLVSSGATLKANKLVEVEEIMNI 183

Query: 185 SSRLVVNQAALKLKRERLQPILDAFEKA 212
           SSRLVVNQAALK+KRE LQP++ A E A
Sbjct: 184 SSRLVVNQAALKMKRELLQPVIAAIEGA 211


Lambda     K      H
   0.318    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 205
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 213
Length adjustment: 22
Effective length of query: 194
Effective length of database: 191
Effective search space:    37054
Effective search space used:    37054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_041100157.1 SUTH_RS14180 (ATP phosphoribosyltransferase)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.7641.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7641.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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