Alignments for a candidate for hisH in Sulfuritalea hydrogenivorans DSM 22779

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate WP_041100147.1 SUTH_RS14140 imidazole glycerol phosphate synthase subunit HisH

Query= reanno::HerbieS:HSERO_RS20325
         (212 letters)



>NCBI__GCF_000828635.1:WP_041100147.1
          Length = 212

 Score =  272 bits (696), Expect = 3e-78
 Identities = 131/212 (61%), Positives = 153/212 (72%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           M+ +VVVDYGMGNLRSVA+A+ HVAPEA+VR+S + A+I AADRVV+PGQGAMPDCMR L
Sbjct: 1   MSTVVVVDYGMGNLRSVAKAIEHVAPEAEVRVSSDAAEIAAADRVVVPGQGAMPDCMREL 60

Query: 61  RESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFDLEGMRQDDG 120
              G+++AV+ A+  KP  G+CVG QMLF  +EEGD  GL +LPG+V RF  E M   DG
Sbjct: 61  SARGLREAVVRAAAEKPFLGICVGLQMLFGHAEEGDVMGLEILPGRVPRFPGEAMAAPDG 120

Query: 121 SLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFACA 180
           S  KVP MGWN V Q   HPLW+GI D A FYFVHSYY  P     + G T YG  F  A
Sbjct: 121 SRLKVPHMGWNQVQQVEAHPLWDGIEDGARFYFVHSYYVEPQSPEVIAGSTHYGIPFTSA 180

Query: 181 VARDNIFATQFHPEKSASAGLQLYRNFVHWKP 212
           VAR NIFA QFHPEKSA AGL+L  NF+ W P
Sbjct: 181 VARANIFAVQFHPEKSAQAGLRLLGNFMRWNP 212


Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 208
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 212
Length adjustment: 21
Effective length of query: 191
Effective length of database: 191
Effective search space:    36481
Effective search space used:    36481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_041100147.1 SUTH_RS14140 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.680.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.680.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.