Alignments for a candidate for prs in Sulfuritalea hydrogenivorans DSM 22779

Align ribose-phosphate diphosphokinase (EC 2.7.6.1) (characterized)
to candidate WP_041100795.1 SUTH_RS16460 ribose-phosphate pyrophosphokinase

Query= BRENDA::P0A719
         (315 letters)



>NCBI__GCF_000828635.1:WP_041100795.1
          Length = 316

 Score =  405 bits (1041), Expect = e-118
 Identities = 201/310 (64%), Positives = 256/310 (82%), Gaps = 1/310 (0%)

Query: 4   MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPT 63
           + +F GNA P+LA  +  RL  SLG A VGRFSDGEVS +I E+VRG D+F++QSTC PT
Sbjct: 6   LMVFTGNANPKLAADVVKRLNISLGRANVGRFSDGEVSCEILEHVRGHDVFVLQSTCYPT 65

Query: 64  NDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVD 123
           NDNLMEL+VMVDAL+RASAGRITA IPYFGYARQDRR RSARV ITAK+VA+ L + GV 
Sbjct: 66  NDNLMELLVMVDALKRASAGRITAAIPYFGYARQDRRTRSARVAITAKLVANMLQTAGVQ 125

Query: 124 RVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLNLDNPIVVSPDIGGVVRARAIAKL 183
           RVLTVDLHA+QIQGFFD+PVDNV+ +PILL D+ +   ++ +VVSPD+GGVVRARA+AK 
Sbjct: 126 RVLTVDLHADQIQGFFDIPVDNVYAAPILLGDIWKQRHEDLLVVSPDVGGVVRARALAKR 185

Query: 184 LNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKR 243
           L ++D+AIIDKRRP+ANVS+VM+IIG+V GR CV++DDM+DT GTLCKAA+ALKE GAK 
Sbjct: 186 L-ESDLAIIDKRRPKANVSEVMNIIGEVDGRTCVIMDDMVDTAGTLCKAAQALKEHGAKS 244

Query: 244 VFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLSDEIKSLPNVRTLTLSGMLAEAIRRI 303
           V AY THP+ SG+A + +  S +DE+VV DTIPLSDE ++   +R ++++ ++AE + RI
Sbjct: 245 VLAYCTHPVLSGSAISRIMESELDELVVTDTIPLSDEARACKRIRQISIAELMAETMLRI 304

Query: 304 SNEESISAMF 313
           SNE S+S++F
Sbjct: 305 SNESSVSSLF 314


Lambda     K      H
   0.321    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 300
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 316
Length adjustment: 27
Effective length of query: 288
Effective length of database: 289
Effective search space:    83232
Effective search space used:    83232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_041100795.1 SUTH_RS16460 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.544.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.544.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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