Alignments for a candidate for ilvA in Sulfuritalea hydrogenivorans DSM 22779

Align Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 (characterized)
to candidate WP_041101209.1 SUTH_RS17910 threonine ammonia-lyase, biosynthetic

Query= SwissProt::A0FKE6
         (606 letters)



>NCBI__GCF_000828635.1:WP_041101209.1
          Length = 501

 Score =  547 bits (1409), Expect = e-160
 Identities = 281/500 (56%), Positives = 366/500 (73%), Gaps = 2/500 (0%)

Query: 107 EYLTNILSSKVYDVAYETPLQKAPKLSERLGVNVWLKREDLQPVFSFKIRGAYNMMAKLP 166
           +YL  IL+++VYDVA ETPL+ AP LS R+G N+  KRED+QPVFSFK+RGAYN +A L 
Sbjct: 2   DYLERILNARVYDVAIETPLEPAPILSARVGNNILFKREDMQPVFSFKLRGAYNKIAHLT 61

Query: 167 KEQLEKGVICSSAGNHAQGVALSAQRLGCDAVIVMPVTTPDIKWKSVKRLGATVVLVGDS 226
             Q ++GVIC+SAGNHAQGVALSAQ+LG  AVIVMP TTP IK  +VK+ GA VVL GDS
Sbjct: 62  PAQRKRGVICASAGNHAQGVALSAQKLGLRAVIVMPTTTPQIKIDAVKKRGAEVVLAGDS 121

Query: 227 YDEAQAYAKKRAESEGRTFIPPFDHPDVIVGQGTVGMEINRQLKDNIHAIFVPVGGGGLI 286
           YD A A+A +  + +   F+ PFD PDVI GQGT+GMEI RQ  D I A+F  VGGGGLI
Sbjct: 122 YDAAYAHALELEKKQKLNFVHPFDDPDVIAGQGTIGMEILRQHPDPIDAVFCCVGGGGLI 181

Query: 287 AGIAAYLKRVAPDIKIIGVEPLDANALALSLHHGQRVMLDQVGGFADGVAVKVVGEETYR 346
           +G+AAY+KR+ P+ ++IGVE  DA+A+  SL  G+RV L+ VG FADG AVK VG+ET+R
Sbjct: 182 SGVAAYIKRLRPETRVIGVEAADADAMDRSLKAGKRVRLESVGLFADGAAVKYVGQETFR 241

Query: 347 LCEELIDGVVLVGRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKGENVVAI 406
           LC++ +D +VLV  DAICA+IKD+FE+ RSILEPAGALA+AGA+A+ K +G++G+ +VA+
Sbjct: 242 LCQQYVDEMVLVDTDAICAAIKDVFEDTRSILEPAGALAVAGAKAWAKKHGVQGKTLVAV 301

Query: 407 TSGANMNFDRLRLVTELADVGRQREAVLATFMPEDPGSFKKFAEMVGPMNITEFKYRYNS 466
            SGANMNFDRLR V E A+VG QREAVLA  +PE PGS+KKF  ++G  +ITEF YR++ 
Sbjct: 302 ASGANMNFDRLRFVAERAEVGEQREAVLAVTLPEKPGSYKKFVSLIGSRSITEFNYRFH- 360

Query: 467 DKERALVLYSVGLHTILELEGMVERMESADLQTINLTDNDLVKDHLRHLMGGRT-NVHNE 525
           D   A V   + +    E   +V +++      ++LTD+++ K H+RHL+GG    V NE
Sbjct: 361 DAGEAHVFVGMQVANRGEATKLVAQLQKNGYPALDLTDDEMAKLHIRHLVGGHAPQVKNE 420

Query: 526 LLCRFTFPEKPGALMKFLDAFSPRWNISLFHYRAQGDTGANVLVGIQVPPDEVVEFEGRA 585
           L+ RF FPE+PGALM FL+  S  WNISLFHYR  G     VLVG++VPP E+ +F    
Sbjct: 421 LIYRFEFPERPGALMHFLNKMSAGWNISLFHYRNHGADTGRVLVGMEVPPKEMKDFRAFL 480

Query: 586 DSLGYEYAMESLNEAYQLIM 605
            +LGY +  E+ N AY+L +
Sbjct: 481 KNLGYRFWDETKNPAYRLFL 500


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 737
Number of extensions: 30
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 501
Length adjustment: 36
Effective length of query: 570
Effective length of database: 465
Effective search space:   265050
Effective search space used:   265050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_041101209.1 SUTH_RS17910 (threonine ammonia-lyase, biosynthetic)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.26924.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26924.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.