Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_041096517.1 SUTH_RS01440 dihydroxy-acid dehydratase
Query= SwissProt::Q1MIB2
(612 letters)
>NCBI__GCF_000828635.1:WP_041096517.1
Length = 615
Score = 922 bits (2384), Expect = 0.0
Identities = 458/613 (74%), Positives = 521/613 (84%), Gaps = 4/613 (0%)
Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
MP YRSRT+THGRNMAGAR LWRATGMKD DFGKPIIAVVNSFTQFVPGHVHLKD+GQLV
Sbjct: 1 MPAYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQFVPGHVHLKDMGQLV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
AREIEAAGGVAKEFNTIA+DDGIAMGH GMLYSLPSRELIADSVEYMVN HCADAMVCIS
Sbjct: 61 AREIEAAGGVAKEFNTIAIDDGIAMGHGGMLYSLPSRELIADSVEYMVNGHCADAMVCIS 120
Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVVMHGKTHALDLVDAMVAAADDKISDED 180
NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKV HG+ +DL+DAM+ +ADDK SD +
Sbjct: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVKWHGEYRMVDLIDAMIESADDKNSDAE 180
Query: 181 VQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLIV 240
V ++ERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGS LATH DR+ LF++AG + V
Sbjct: 181 VASMERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSLLATHADREMLFLKAGRVAV 240
Query: 241 DLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMAD 300
DL RR+Y +DD LPR+IAS AFENA+ LDIAMGGSTNTVLH+LAAA E ++FT+AD
Sbjct: 241 DLCRRWYVEDDASVLPRSIASFAAFENAIALDIAMGGSTNTVLHLLAAAQEAGVNFTLAD 300
Query: 301 IDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGDA 360
ID +SR+VPCL+KVAPA HMEDVHRAGGIM+ILGELD+ GL+NRDCPTV ++G+A
Sbjct: 301 IDRMSRKVPCLAKVAPATQKYHMEDVHRAGGIMAILGELDRAGLINRDCPTVLYPSMGEA 360
Query: 361 IDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG 420
+D D+ R NS V FYRAAPGG+PTQVAFSQ R+ +LD DR NG I H +S+DG
Sbjct: 361 LDCCDVKRNNSPAVHHFYRAAPGGVPTQVAFSQNRRYPKLDLDRVNGCIHDKAHAYSQDG 420
Query: 421 GLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIRY 480
GLAVL GN+A GC+VKTAGVD++ LKF+G ARV +SQ+ +V+ ILA+++ AGD+V++ Y
Sbjct: 421 GLAVLFGNIAEKGCVVKTAGVDDANLKFTGRARVCQSQEEAVEKILADQIVAGDIVIVVY 480
Query: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIGL 540
EGPKGGPGMQEMLYPTSYLKSKGLGKACAL+TDGRFSGGTSGLSIGHASPEAA GG IGL
Sbjct: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGL 540
Query: 541 VREGDMIDIDIPNRTISLRVSETELAARRAEQDAKG---WYPTEVRKRNVTTALKAYAAF 597
V EGD I+IDIPNR I L V E+ LAARR +A+G W P R+R V+ ALKAYAA
Sbjct: 541 VEEGDTIEIDIPNRRIHLAVQESALAARRTAMEARGTAAWKPVN-RQREVSAALKAYAAM 599
Query: 598 ATSADRGAVRDLN 610
TSAD GAVRD++
Sbjct: 600 TTSADTGAVRDIS 612
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1278
Number of extensions: 34
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 615
Length adjustment: 37
Effective length of query: 575
Effective length of database: 578
Effective search space: 332350
Effective search space used: 332350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_041096517.1 SUTH_RS01440 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.679.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.679.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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