Alignments for a candidate for ilvC in Sulfuritalea hydrogenivorans DSM 22779

Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate WP_041099917.1 SUTH_RS13445 ketol-acid reductoisomerase

Query= metacyc::MONOMER-18814
         (338 letters)



>NCBI__GCF_000828635.1:WP_041099917.1
          Length = 338

 Score =  528 bits (1361), Expect = e-155
 Identities = 257/338 (76%), Positives = 291/338 (86%)

Query: 1   MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVNVTVGLRKSGASWNKAANAG 60
           MKV+YDKDADLSLIKG+ VTI+GYGSQGHAHA NLKDSGV VTVGLRK GASW+KA  AG
Sbjct: 1   MKVYYDKDADLSLIKGRKVTIVGYGSQGHAHAQNLKDSGVKVTVGLRKGGASWDKAKKAG 60

Query: 61  LQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPRA 120
           L+V+EVA+AVK ADVVM+LLPDE I  VY  EV  N+K+GAALAFAHGFNVHY  V+PR 
Sbjct: 61  LKVEEVAKAVKDADVVMMLLPDETIPSVYYGEVESNMKKGAALAFAHGFNVHYNQVVPRT 120

Query: 121 DLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGIIE 180
           D+DVIM+APK PGHTVR+ Y +GGGVP LIA+HQ+KSG A+DIALSYA ANGG + G+IE
Sbjct: 121 DVDVIMVAPKGPGHTVRSEYLRGGGVPSLIAIHQDKSGKAKDIALSYAAANGGTKGGVIE 180

Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240
           TNFREETETDLFGEQAVLCGG VELIKAG+ETL EAGYAPEMAYFECLHE+KLIVDLI+E
Sbjct: 181 TNFREETETDLFGEQAVLCGGLVELIKAGYETLTEAGYAPEMAYFECLHEVKLIVDLIFE 240

Query: 241 GGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAPT 300
           GGIANMNYSISNNAEYGEYVTGP+V+  E + AMK  L  IQ GEYAK F+LE +   P 
Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPKVIGAEARAAMKDALKAIQEGEYAKKFILEGRTNYPE 300

Query: 301 LISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338
           + +RRRLTA H IE+VG +LRAMMPWI KNK+VDQ+KN
Sbjct: 301 MTARRRLTAAHPIEQVGEQLRAMMPWIKKNKLVDQTKN 338


Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 517
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 338
Length adjustment: 28
Effective length of query: 310
Effective length of database: 310
Effective search space:    96100
Effective search space used:    96100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_041099917.1 SUTH_RS13445 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.9577.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9577.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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