Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_041096517.1 SUTH_RS01440 dihydroxy-acid dehydratase
Query= SwissProt::Q1MIB2 (612 letters) >NCBI__GCF_000828635.1:WP_041096517.1 Length = 615 Score = 922 bits (2384), Expect = 0.0 Identities = 458/613 (74%), Positives = 521/613 (84%), Gaps = 4/613 (0%) Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60 MP YRSRT+THGRNMAGAR LWRATGMKD DFGKPIIAVVNSFTQFVPGHVHLKD+GQLV Sbjct: 1 MPAYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQFVPGHVHLKDMGQLV 60 Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120 AREIEAAGGVAKEFNTIA+DDGIAMGH GMLYSLPSRELIADSVEYMVN HCADAMVCIS Sbjct: 61 AREIEAAGGVAKEFNTIAIDDGIAMGHGGMLYSLPSRELIADSVEYMVNGHCADAMVCIS 120 Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVVMHGKTHALDLVDAMVAAADDKISDED 180 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKV HG+ +DL+DAM+ +ADDK SD + Sbjct: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVKWHGEYRMVDLIDAMIESADDKNSDAE 180 Query: 181 VQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLIV 240 V ++ERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGS LATH DR+ LF++AG + V Sbjct: 181 VASMERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSLLATHADREMLFLKAGRVAV 240 Query: 241 DLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMAD 300 DL RR+Y +DD LPR+IAS AFENA+ LDIAMGGSTNTVLH+LAAA E ++FT+AD Sbjct: 241 DLCRRWYVEDDASVLPRSIASFAAFENAIALDIAMGGSTNTVLHLLAAAQEAGVNFTLAD 300 Query: 301 IDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGDA 360 ID +SR+VPCL+KVAPA HMEDVHRAGGIM+ILGELD+ GL+NRDCPTV ++G+A Sbjct: 301 IDRMSRKVPCLAKVAPATQKYHMEDVHRAGGIMAILGELDRAGLINRDCPTVLYPSMGEA 360 Query: 361 IDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG 420 +D D+ R NS V FYRAAPGG+PTQVAFSQ R+ +LD DR NG I H +S+DG Sbjct: 361 LDCCDVKRNNSPAVHHFYRAAPGGVPTQVAFSQNRRYPKLDLDRVNGCIHDKAHAYSQDG 420 Query: 421 GLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIRY 480 GLAVL GN+A GC+VKTAGVD++ LKF+G ARV +SQ+ +V+ ILA+++ AGD+V++ Y Sbjct: 421 GLAVLFGNIAEKGCVVKTAGVDDANLKFTGRARVCQSQEEAVEKILADQIVAGDIVIVVY 480 Query: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIGL 540 EGPKGGPGMQEMLYPTSYLKSKGLGKACAL+TDGRFSGGTSGLSIGHASPEAA GG IGL Sbjct: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGL 540 Query: 541 VREGDMIDIDIPNRTISLRVSETELAARRAEQDAKG---WYPTEVRKRNVTTALKAYAAF 597 V EGD I+IDIPNR I L V E+ LAARR +A+G W P R+R V+ ALKAYAA Sbjct: 541 VEEGDTIEIDIPNRRIHLAVQESALAARRTAMEARGTAAWKPVN-RQREVSAALKAYAAM 599 Query: 598 ATSADRGAVRDLN 610 TSAD GAVRD++ Sbjct: 600 TTSADTGAVRDIS 612 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1278 Number of extensions: 34 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 612 Length of database: 615 Length adjustment: 37 Effective length of query: 575 Effective length of database: 578 Effective search space: 332350 Effective search space used: 332350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate WP_041096517.1 SUTH_RS01440 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.31095.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31095.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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