Alignments for a candidate for leuA in Sulfuritalea hydrogenivorans DSM 22779

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate WP_041099915.1 SUTH_RS13435 2-isopropylmalate synthase

Query= BRENDA::Q9JZG1
         (517 letters)



>NCBI__GCF_000828635.1:WP_041099915.1
          Length = 512

 Score =  662 bits (1707), Expect = 0.0
 Identities = 336/497 (67%), Positives = 402/497 (80%)

Query: 6   RVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAK 65
           ++IIFDTTLRDGEQSPGA+MTKEEK+R+ARQLE++ VD+IEAGF AAS GDFEAV A+A+
Sbjct: 5   QLIIFDTTLRDGEQSPGASMTKEEKLRIARQLERMRVDVIEAGFPAASNGDFEAVRAVAE 64

Query: 66  TITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAV 125
           TI  STV  L RA ++DI +A EAV PA   RIHTFIATSPIHME KL+M P  V+ AA 
Sbjct: 65  TIKDSTVAGLCRAFDKDIARALEAVKPAKSGRIHTFIATSPIHMEKKLRMSPDDVLVAAQ 124

Query: 126 KAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEF 185
            AV+ AR    DVEFSCEDA RS++DFL  I  AVI+ GA+TINIPDTVGY++P +  E 
Sbjct: 125 HAVRFARNGIGDVEFSCEDAGRSDLDFLCRIIEAVIKEGASTINIPDTVGYNVPEQYAER 184

Query: 186 FRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEE 245
            R+L  + PN  KVVWS HCHNDLGLAVANSLAA+  GARQVECT+NGLGERAGNA++EE
Sbjct: 185 IRQLRERIPNSDKVVWSVHCHNDLGLAVANSLAAVMAGARQVECTINGLGERAGNAALEE 244

Query: 246 IVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDG 305
           IVMA+  R D+F   T IDTTQIV +SK+VS+ITG+PVQPNKAIVGANAF+HESGIHQDG
Sbjct: 245 IVMAVHTRQDVFPCITRIDTTQIVAASKMVSSITGFPVQPNKAIVGANAFAHESGIHQDG 304

Query: 306 VLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFKE 365
           VLKHRETYEIM AE VGW  N+L LGK SGR AFK +L +LGIE+ESE+ LN AF  FKE
Sbjct: 305 VLKHRETYEIMRAEDVGWNANKLVLGKHSGRTAFKARLKELGIEVESEQVLNVAFTHFKE 364

Query: 366 LADKKREIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRAS 425
           LADKK EIFDEDLHAL+SDEM   + E YK +S    +ETGE P+A +  S  G E+ A+
Sbjct: 365 LADKKHEIFDEDLHALMSDEMVPPDDEHYKLVSSMFHSETGEAPQAKLTLSAGGTEQHAA 424

Query: 426 ATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGADT 485
           ++GSGPVDA FKAIESVA SG+ L +YSVNA+T GT++QGE +VRL++  R+VNGQGADT
Sbjct: 425 SSGSGPVDATFKAIESVAASGSELLLYSVNAITTGTDAQGEVTVRLSKDGRIVNGQGADT 484

Query: 486 DVLVATAKAYLSALSKL 502
           D++VA+AKAY++AL+KL
Sbjct: 485 DIVVASAKAYINALNKL 501


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 695
Number of extensions: 19
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 512
Length adjustment: 35
Effective length of query: 482
Effective length of database: 477
Effective search space:   229914
Effective search space used:   229914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate WP_041099915.1 SUTH_RS13435 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.13516.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13516.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.