Alignments for a candidate for leuC in Sulfuritalea hydrogenivorans DSM 22779

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_171817326.1 SUTH_RS06430 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_000828635.1:WP_171817326.1
          Length = 468

 Score =  595 bits (1534), Expect = e-174
 Identities = 299/467 (64%), Positives = 356/467 (76%), Gaps = 2/467 (0%)

Query: 1   MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60
           M++TLYEKL+D+HVV+  E+ T LLYIDRHLVHEVTSPQAF+GL+  GR   +     AT
Sbjct: 1   MSRTLYEKLWDSHVVHVEEDGTALLYIDRHLVHEVTSPQAFEGLKLAGRKPWRISSIVAT 60

Query: 61  MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELY-DLNHPYQGIVHVMGPEQGVTL 119
            DHN  T   ++     ++R Q++ L  N +E G   Y       QGIVHV+GPE G TL
Sbjct: 61  ADHNTPTSHWELGIQDPISRQQVETLDANIREVGALAYFPFKDKRQGIVHVVGPENGATL 120

Query: 120 PGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGIT 179
           PGMT+VCGDSHT+THGAF  LA GIGTSEVEHVLATQ L Q ++KTM + V+GK   G+T
Sbjct: 121 PGMTVVCGDSHTSTHGAFACLAHGIGTSEVEHVLATQCLLQKKSKTMLVRVEGKVGAGVT 180

Query: 180 AKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETT 239
           AKDIVLA+IG+ G+AGGTG+ +EF GEAIR LSMEGRMT+CNMAIE GA+ G VA DETT
Sbjct: 181 AKDIVLALIGRIGTAGGTGYAIEFGGEAIRALSMEGRMTVCNMAIEAGARVGFVAADETT 240

Query: 240 FNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVIS 299
             Y+KGR  APKG D+D AVA W+TL +D  A FD VV + A +I PQVTWGT+P  V  
Sbjct: 241 IAYLKGRNFAPKGDDWDKAVAVWRTLVSDADAKFDAVVEMDARQIVPQVTWGTSPEMVAG 300

Query: 300 VNDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAA 359
           ++  +P P  F+DP++     +AL YMGL P + + ++ IDKVFIGSCTNSRIEDLRAAA
Sbjct: 301 IDGTVPAPEDFSDPIKSEGVARALQYMGLTPRMRIDQIPIDKVFIGSCTNSRIEDLRAAA 360

Query: 360 EIAKGRKVAPGVQ-ALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRL 418
            +A+GR VA  V+ ALVVPGSG +K QAEAEGLDKIFI AGFEWR PGCSMCLAMN+DRL
Sbjct: 361 AVARGRTVAANVKLALVVPGSGLIKEQAEAEGLDKIFIAAGFEWRQPGCSMCLAMNDDRL 420

Query: 419 NPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465
           NPGERCASTSNRNFEGRQG GGRTHLVSPAMAAAAA+ G FAD+R +
Sbjct: 421 NPGERCASTSNRNFEGRQGAGGRTHLVSPAMAAAAAIAGRFADVRQL 467


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 733
Number of extensions: 26
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 468
Length adjustment: 33
Effective length of query: 433
Effective length of database: 435
Effective search space:   188355
Effective search space used:   188355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_171817326.1 SUTH_RS06430 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.27826.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27826.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.