Alignments for a candidate for leuD in Sulfuritalea hydrogenivorans DSM 22779

Align 3-isopropylmalate dehydratase small subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate WP_041098000.1 SUTH_RS06435 3-isopropylmalate dehydratase small subunit

Query= uniprot:Q845W4
         (216 letters)



>NCBI__GCF_000828635.1:WP_041098000.1
          Length = 212

 Score =  321 bits (823), Expect = 6e-93
 Identities = 156/210 (74%), Positives = 172/210 (81%)

Query: 1   MEKFTVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60
           MEKF    G+VAPLDR NVDTDAIIPKQFLKSIKR+GFGPNAFDEWRY+DHGEPGQD +K
Sbjct: 1   MEKFVRLDGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNAFDEWRYMDHGEPGQDCTK 60

Query: 61  RPLNPDFVLNQPRYQGASILVTRKNFGCGSSREHAPWALQQYGFRAIIAPSFADIFFNNC 120
           R  NP+FVLNQ RYQGASIL+ R NFGCGSSREHAPWAL  +GFRAII  SFADIFFNNC
Sbjct: 61  RIRNPNFVLNQERYQGASILLARSNFGCGSSREHAPWALHDFGFRAIIGESFADIFFNNC 120

Query: 121 FKNGLLPIVLTEQQVDHLINETVAFNGYQLTIDLEAQVVRTPDGRDYPFEITAFRKYCLL 180
           FKNGLLPIVL + ++D L   T    GY+LTIDL  Q V  PDG   PFE+ AFRK CLL
Sbjct: 121 FKNGLLPIVLPKAEIDALFGLTEHSPGYRLTIDLPGQRVVRPDGHAIPFEVDAFRKECLL 180

Query: 181 NGFDDIGLTLRHADKIRQFEAERLAKQPWL 210
           NG+DDIGLTLRHA+KIR+FE  R A+QPWL
Sbjct: 181 NGWDDIGLTLRHAEKIREFETRRRAEQPWL 210


Lambda     K      H
   0.322    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 237
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 212
Length adjustment: 22
Effective length of query: 194
Effective length of database: 190
Effective search space:    36860
Effective search space used:    36860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_041098000.1 SUTH_RS06435 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.27767.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27767.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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