Alignments for a candidate for asd in Sulfuritalea hydrogenivorans DSM 22779

Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate WP_041101832.1 SUTH_RS06445 aspartate-semialdehyde dehydrogenase

Query= SwissProt::Q51344
         (370 letters)



>NCBI__GCF_000828635.1:WP_041101832.1
          Length = 369

 Score =  573 bits (1476), Expect = e-168
 Identities = 279/368 (75%), Positives = 316/368 (85%)

Query: 1   MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSI 60
           MKRVGL+GWRGMVGSVLMQRM EE DF LIEPVFFTTSN GG+ PE      PLKDA +I
Sbjct: 1   MKRVGLVGWRGMVGSVLMQRMREENDFALIEPVFFTTSNPGGKAPEFAVGAPPLKDAKNI 60

Query: 61  DELKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVID 120
           DELK LD+I++CQGGDYT++VFPKLRE GW+G+WIDAASSLRM+DD VI+LDPVN  VI+
Sbjct: 61  DELKKLDIIISCQGGDYTNDVFPKLREGGWKGHWIDAASSLRMKDDTVIILDPVNLDVIE 120

Query: 121 QALDAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMG 180
            +L  G RN+IGGNCTVSLM+MALGGLF AGL+EWM++MTYQAASGAGAQNMRELL QMG
Sbjct: 121 ASLARGGRNWIGGNCTVSLMMMALGGLFKAGLIEWMTSMTYQAASGAGAQNMRELLTQMG 180

Query: 181 AAHASVADDLANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSR 240
             H  V + L +PASAILDIDR+VA  LR E+FPT +FG PL GSLIPWIDK+L NGQSR
Sbjct: 181 ETHRVVKNLLDDPASAILDIDREVAGILRDESFPTANFGVPLAGSLIPWIDKDLGNGQSR 240

Query: 241 EEWKAQAETNKILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHN 300
           EEWK QAETNKIL R   PIPVDG+CVR+GAMRCHSQALTIKL +DVPL +I G+++ HN
Sbjct: 241 EEWKGQAETNKILGRTATPIPVDGLCVRIGAMRCHSQALTIKLTRDVPLDEINGILAAHN 300

Query: 301 PWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPL 360
            WVK+VPN REV+++ELTP AVTGTLSVPVGRLRKL MG QYL AFTVGDQLLWGAAEPL
Sbjct: 301 DWVKVVPNQREVTLKELTPTAVTGTLSVPVGRLRKLGMGPQYLSAFTVGDQLLWGAAEPL 360

Query: 361 RRMLRILL 368
           RRMLR+LL
Sbjct: 361 RRMLRLLL 368


Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 565
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 369
Length adjustment: 30
Effective length of query: 340
Effective length of database: 339
Effective search space:   115260
Effective search space used:   115260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_041101832.1 SUTH_RS06445 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.7613.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7613.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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