Alignments for a candidate for dapA in Sulfuritalea hydrogenivorans DSM 22779

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_041099538.1 SUTH_RS12045 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::Q9I4W3
         (292 letters)



>NCBI__GCF_000828635.1:WP_041099538.1
          Length = 294

 Score =  341 bits (874), Expect = 1e-98
 Identities = 170/289 (58%), Positives = 215/289 (74%)

Query: 2   IAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIR 61
           I GS+ A++TP    G LD   L +L+D+H+ EG++ +V VGTTGES T+D  EH  +I 
Sbjct: 4   IQGSIPAILTPMQDDGSLDLTGLQRLLDWHIAEGSDGVVIVGTTGESPTVDYAEHCALIE 63

Query: 62  RVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRH 121
             V  V GRIPVIAGTGANST EAV L + A+  GADA L V PYYNKPTQEG+++HF+ 
Sbjct: 64  TTVKHVAGRIPVIAGTGANSTAEAVELAQFARKAGADAHLSVVPYYNKPTQEGLFRHFKT 123

Query: 122 IAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDF 181
           IAEAV +P ILYNVPGRT  D+  +T  RL++VP I+GIK+AT +++R  ++++R    F
Sbjct: 124 IAEAVDLPMILYNVPGRTVADLATDTTLRLAQVPGIVGIKDATANIERGSDLLKRAPTGF 183

Query: 182 LVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHK 241
            VYSGDDATA+ LMLLGGKG+ISVTANVAPR M  +CAAA+ GD A AR IN RL+ LH+
Sbjct: 184 SVYSGDDATAIALMLLGGKGSISVTANVAPRLMHQMCAAAIAGDLATAREINFRLLGLHR 243

Query: 242 ALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGV 290
            LF E+NPIPVKWA  +MGLI  G+RLP+T LSP  HE +R AMR+ G+
Sbjct: 244 NLFHEANPIPVKWAAQQMGLIGGGMRLPMTPLSPEFHERVRLAMREAGI 292


Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 302
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 294
Length adjustment: 26
Effective length of query: 266
Effective length of database: 268
Effective search space:    71288
Effective search space used:    71288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_041099538.1 SUTH_RS12045 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.24241.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24241.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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