Alignments for a candidate for dapB in Sulfuritalea hydrogenivorans DSM 22779

Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate WP_041098067.1 SUTH_RS06640 4-hydroxy-tetrahydrodipicolinate reductase

Query= BRENDA::Q9K1F1
         (269 letters)



>NCBI__GCF_000828635.1:WP_041098067.1
          Length = 268

 Score =  331 bits (848), Expect = 1e-95
 Identities = 165/267 (61%), Positives = 202/267 (75%), Gaps = 1/267 (0%)

Query: 1   MTPLKIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALGLDAGYAVGLKTGIAIS 60
           M  ++ AIAG++GRMGR L+EAV      VL+ ALEH  S  LG DAG  VG   G+ I+
Sbjct: 1   MEKIRYAIAGSSGRMGRTLIEAVQQDAGAVLAAALEHESSPFLGKDAGELVGAPCGVRIT 60

Query: 61  DDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTGFDDTGKAAIHTAAEKTGI 120
            D+DA LA +D LIDFTRPE TL+HL  C   +V+++IGTTGF   GK AI  AA +  +
Sbjct: 61  ADLDAALAVADCLIDFTRPEGTLEHLAACRRHKVSLVIGTTGFSAQGKRAIEEAAREIPV 120

Query: 121 VFAANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHKVDAPSGTALRMGEVIAGALG 180
           VFA N +VGVN  F +LD  AR+LNEGYDIE+IE HHRHKVDAPSGTALRMGE++A ALG
Sbjct: 121 VFAPNMAVGVNAVFRLLDVAARILNEGYDIEVIEAHHRHKVDAPSGTALRMGELVAAALG 180

Query: 181 RDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHTALFATDGERVEITHKASSRMTF 240
           RDL +CAVYGREGHTG R  + IGF+T+R GDIVGDHT LFA  GER+EITHK++SRM +
Sbjct: 181 RDLSECAVYGREGHTGERPATQIGFSTIRGGDIVGDHTVLFAGAGERIEITHKSASRMPY 240

Query: 241 AAGAVRAAVWVNG-KTGLYDMQDVLGL 266
           A GA+RA  +++G + GL+DMQDVLGL
Sbjct: 241 ALGALRAGRFMSGHERGLFDMQDVLGL 267


Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 278
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 268
Length adjustment: 25
Effective length of query: 244
Effective length of database: 243
Effective search space:    59292
Effective search space used:    59292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_041098067.1 SUTH_RS06640 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.23672.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23672.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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