Alignments for a candidate for dapC in Sulfuritalea hydrogenivorans DSM 22779

Align N-succinyldiaminopimelate-aminotransferase (EC 2.6.1.17) (characterized)
to candidate WP_041101994.1 SUTH_RS08365 succinyldiaminopimelate transaminase

Query= metacyc::MONOMER-6501
         (397 letters)



>NCBI__GCF_000828635.1:WP_041101994.1
          Length = 397

 Score =  471 bits (1211), Expect = e-137
 Identities = 245/394 (62%), Positives = 285/394 (72%), Gaps = 3/394 (0%)

Query: 1   MNPRLDALHPYPFEKLRALLADAGKPTHDLPPINLSIGEPKHAAPACVGQAIAANLAGLS 60
           MNP L  L PYPFEKLR L A    P   L  I LSIGEP+HA P  + +A+A NLAGL+
Sbjct: 1   MNPDLALLQPYPFEKLRQLFAGV-PPAPTLGEIKLSIGEPQHATPPFIQRALADNLAGLA 59

Query: 61  VYPSTKGEPALRQAISQWLSRRYSIPAPDPESEVLPVLGSREALFAFAQTVIDPSAG-AL 119
            YP+T+G  ALRQ I+ W++RRY +  PD  ++VLPV GSREALFAFAQTVID S G A 
Sbjct: 60  NYPTTQGADALRQTIAAWIARRYGVAPPDAATQVLPVNGSREALFAFAQTVIDRSGGHAK 119

Query: 120 VVCPNPFYQIYEGAALLAGATPYYVNADPARDFGLRTGRVPDEVWRRTQLVFVCSPGNPA 179
           VVCPNPFYQIYEGAALLAGA P Y+N  P   F +    +P+  WR  QLV+VCSP NP 
Sbjct: 120 VVCPNPFYQIYEGAALLAGAQPIYLNTLPHTHFEMDWAALPESAWRDVQLVYVCSPANPT 179

Query: 180 GNVMSLEEWRTLFELSDRHGFVIAAYECYSEIYLDEDTPPLGSLQAARRLGRDRYTNLVA 239
           G VM+L+ W+ LFELSDRHGFVIA+ ECYSEIY DE  PPLG L AA +LGR  Y NLV 
Sbjct: 180 GKVMTLDSWKALFELSDRHGFVIASDECYSEIYFDEAKPPLGGLTAAAQLGRGDYRNLVM 239

Query: 240 FSSLSKRSNVPGMRSGFVAGDAALLARFLLYRTYHGSAMSPVVSAASIAAWSMRRMCRKT 299
           FSSLSKRSNVPG+RSGFVAGDA+++ +FLLYRTYHGSAM+P V AASIAAW+     R  
Sbjct: 240 FSSLSKRSNVPGLRSGFVAGDASIVKKFLLYRTYHGSAMNPAVQAASIAAWNDEAHVRDN 299

Query: 300 AQ-YRAKFEAVLPILQNVLDVRAPQASFYLWAGTPGSDTAFARELYGRTGVTVLPGSLLA 358
            + Y  KF  V P++ + LD R P A FYLWA TP +DT FAREL  R  V VLPGS LA
Sbjct: 300 RRMYAEKFHEVTPLIAHHLDCRVPDAGFYLWAKTPIADTEFARELLRRKNVVVLPGSYLA 359

Query: 359 REAHNANPGQGRIRIALVAPLDQCVQAAERIAHF 392
           REA+  NPG   IRIALVAP ++C++AA RI  F
Sbjct: 360 REANGINPGADFIRIALVAPHEECLEAARRINDF 393


Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 589
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 397
Length adjustment: 31
Effective length of query: 366
Effective length of database: 366
Effective search space:   133956
Effective search space used:   133956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_041101994.1 SUTH_RS08365 (succinyldiaminopimelate transaminase)
to HMM TIGR03538 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.14830.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14830.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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