Alignments for a candidate for dapC in Sulfuritalea hydrogenivorans DSM 22779

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_041102150.1 SUTH_RS09890 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::P23721
         (362 letters)



>NCBI__GCF_000828635.1:WP_041102150.1
          Length = 360

 Score =  399 bits (1024), Expect = e-116
 Identities = 204/362 (56%), Positives = 255/362 (70%), Gaps = 2/362 (0%)

Query: 1   MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL 60
           MA+IFNFS+GPA LP  VL+QA  E+ DW+G GTSVME+SHRGKEF+ +A +AE D R+L
Sbjct: 1   MARIFNFSAGPAALPEAVLQQAADEMLDWHGSGTSVMEMSHRGKEFMGIAAQAEADLREL 60

Query: 61  LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD 120
           + +P+NYKVLF  GG   QF  +P+N+L  K  ADYV  G WA  AIK AK +   NV  
Sbjct: 61  MAIPANYKVLFLQGGASAQFEMIPINLLRGKGAADYVHTGEWAKKAIKAAKAFGNVNVV- 119

Query: 121 AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTIL 180
           A               W+L  NAAY+HY  NETI G+    TPD G DV +  D SS IL
Sbjct: 120 ASAEDKAFTYAPAQASWKLDKNAAYVHYTANETIGGVEFHWTPDTG-DVPLVCDMSSNIL 178

Query: 181 SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNT 240
           S+P+DVS++G+IYAGAQKNIGPAGLTIVI+R+DL+G A    P++LDY    D  SM+NT
Sbjct: 179 SKPVDVSKFGLIYAGAQKNIGPAGLTIVIIRDDLVGHAQPTPPAMLDYKTHVDAESMYNT 238

Query: 241 PPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNV 300
           PPT+A Y++GLVF+WLK NGGVA M++ N  KA LLY  +  +DFYRN V K +RSRMNV
Sbjct: 239 PPTYAIYIAGLVFQWLKKNGGVAAMERQNIAKANLLYDYLATTDFYRNPVRKEDRSRMNV 298

Query: 301 PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 360
           PF L D+ALD+ FL+ + + G+  LKGHR VGGMRASIYNAMP+ GV+AL  +M EF  +
Sbjct: 299 PFTLKDAALDEEFLKGAKSRGMAQLKGHRSVGGMRASIYNAMPVAGVEALVAYMKEFAAQ 358

Query: 361 HG 362
            G
Sbjct: 359 KG 360


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 414
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 360
Length adjustment: 29
Effective length of query: 333
Effective length of database: 331
Effective search space:   110223
Effective search space used:   110223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_041102150.1 SUTH_RS09890 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.11370.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11370.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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