Alignments for a candidate for dapD in Sulfuritalea hydrogenivorans DSM 22779

Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate WP_041098506.1 SUTH_RS08360 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Query= SwissProt::P56220
         (274 letters)



>NCBI__GCF_000828635.1:WP_041098506.1
          Length = 272

 Score =  420 bits (1080), Expect = e-122
 Identities = 206/271 (76%), Positives = 230/271 (84%)

Query: 1   MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLK 60
           M +LQ +IE A+E RA+++P        +AV  V+G LDSGALRVAEKIDGQW THQW+K
Sbjct: 1   MNELQQIIEQAWEDRANLSPGVAPARVGDAVAHVLGELDSGALRVAEKIDGQWTTHQWIK 60

Query: 61  KAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARN 120
           KAVLLSFR+ DN+VMDG   RYYDKVP KFA YD   FQK GFRVVPPA  R+G+FIARN
Sbjct: 61  KAVLLSFRLEDNQVMDGGPMRYYDKVPNKFAHYDAHMFQKGGFRVVPPAVARRGSFIARN 120

Query: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180
            VLMPS+VNIGAYVDEG+MVD WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTII D
Sbjct: 121 VVLMPSFVNIGAYVDEGSMVDAWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIGD 180

Query: 181 NCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS 240
           NCF+GARSEVVEGVIVE+  VISMGVY+GQST+IYDR TGE+ YGR+P GSVVVSGNLPS
Sbjct: 181 NCFVGARSEVVEGVIVEDNCVISMGVYIGQSTKIYDRATGEVMYGRIPEGSVVVSGNLPS 240

Query: 241 KDGSYSLYCAVIVKKVDAKTRGKVGINELLR 271
            DG YSLYCAVIVK+VDA+TR K  IN+LLR
Sbjct: 241 ADGKYSLYCAVIVKRVDAQTRAKTAINDLLR 271


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 325
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 272
Length adjustment: 25
Effective length of query: 249
Effective length of database: 247
Effective search space:    61503
Effective search space used:    61503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_041098506.1 SUTH_RS08360 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))

Software error:

../bin/blast/fastacmd -i /tmp/list.24042.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24042.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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