Alignments for a candidate for dapE in Sulfuritalea hydrogenivorans DSM 22779

Align Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 (characterized)
to candidate WP_041098502.1 SUTH_RS08350 succinyl-diaminopimelate desuccinylase

Query= SwissProt::Q9JYL2
         (381 letters)



>NCBI__GCF_000828635.1:WP_041098502.1
          Length = 380

 Score =  444 bits (1143), Expect = e-129
 Identities = 218/375 (58%), Positives = 270/375 (72%), Gaps = 5/375 (1%)

Query: 7   LELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEELHFGDTKNIWLRRGTKAP----V 62
           LE A+ LI+RPSVTPDD  C  L+A  L  +GF  E +  G   N+W RR         V
Sbjct: 4   LEKARALIARPSVTPDDAGCLDLIASWLTPLGFTIERIDAGGVSNLWARRDPVGKPTGRV 63

Query: 63  VCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHP- 121
           +CFAGHTDVVPTGP+EKW SPPFEP  RDG LYGRGAADMK+SIA  V A ER   + P 
Sbjct: 64  ICFAGHTDVVPTGPLEKWTSPPFEPTVRDGYLYGRGAADMKSSIAACVVAMERLANRRPA 123

Query: 122 NHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRG 181
           +   S+ALL+TSDEEGDA++GT +VV+ L+AR+E ID+CIVGEPT V +LGD +KNGRRG
Sbjct: 124 SADFSLALLLTSDEEGDAVNGTVRVVEALQARNEKIDFCIVGEPTCVGRLGDTMKNGRRG 183

Query: 182 SLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGG 241
           SLS +L++KG QGH+AYPHL  NPVH  APAL EL    WD GNEYFPPTSFQISN + G
Sbjct: 184 SLSASLSIKGVQGHVAYPHLVRNPVHLAAPALAELAATTWDAGNEYFPPTSFQISNAHAG 243

Query: 242 TGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPFLTQAGK 301
           TGA NV+PG   + FNFRF+T ST   L+ RVHA+LD+HG++YD++W+   +PFLT  G 
Sbjct: 244 TGAGNVVPGSFEIMFNFRFATASTVESLQSRVHALLDRHGLEYDIRWTLGAKPFLTPRGA 303

Query: 302 LTDVARAAIAETCGIEAELSTTGGTSDGRFIKAIAQELIELGPSNATIHQINENVRLNDI 361
           L +    A+A   GI AELSTTGGTSDGRFI  I  +L+E GP NA+IH+I+E + + D+
Sbjct: 304 LCEALTEAVATEIGIAAELSTTGGTSDGRFIADICAQLVEFGPVNASIHKIDECIAVADL 363

Query: 362 PKLSAVYEGILARLL 376
             L+ +YE    RL+
Sbjct: 364 EPLARIYERTFERLM 378


Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 443
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 380
Length adjustment: 30
Effective length of query: 351
Effective length of database: 350
Effective search space:   122850
Effective search space used:   122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_041098502.1 SUTH_RS08350 (succinyl-diaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.23403.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23403.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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