Alignments for a candidate for dapF in Sulfuritalea hydrogenivorans DSM 22779

Align Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 (characterized)
to candidate WP_041096322.1 SUTH_RS00740 diaminopimelate epimerase

Query= SwissProt::P0A6K1
         (274 letters)



>NCBI__GCF_000828635.1:WP_041096322.1
          Length = 280

 Score =  302 bits (773), Expect = 6e-87
 Identities = 156/274 (56%), Positives = 184/274 (67%)

Query: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60
           ++F+KMHGLGNDF+V+DA+ QN   +PE  R LADRH G+G DQLLVVE    P +DF Y
Sbjct: 3   IRFTKMHGLGNDFVVLDAINQNFVPTPEQARWLADRHFGIGCDQLLVVEKTDTPGVDFRY 62

Query: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120
           RIFNADG EV QCGNGARCF RFV  +GLT KR+IRV T  G +   +  D  V V+MG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHEQGLTQKREIRVETKCGIIAPRLEADGQVNVDMGA 122

Query: 121 PNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGPVLE 180
           P F P+ +PF +        +   + TI   VVSMGNPH V  V DVD A V  LGP++E
Sbjct: 123 PRFLPAEIPFDSATDAVVQPLMVGDATIDISVVSMGNPHAVQVVADVDAAPVAQLGPLIE 182

Query: 181 SHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRV 240
           +H RFP R N GFMQ+V R  IRLRVYERGAGET ACG+GACAAV  GI++GLL   VRV
Sbjct: 183 AHPRFPRRVNAGFMQIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRGLLDSPVRV 242

Query: 241 ELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
              GG L IAW G   P+ MTGPA  V+   I L
Sbjct: 243 ATRGGELSIAWGGANSPVMMTGPATTVFTAEIEL 276


Lambda     K      H
   0.323    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 271
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 280
Length adjustment: 25
Effective length of query: 249
Effective length of database: 255
Effective search space:    63495
Effective search space used:    63495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)

Align candidate WP_041096322.1 SUTH_RS00740 (diaminopimelate epimerase)
to HMM TIGR00652 (dapF: diaminopimelate epimerase (EC 5.1.1.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.3771.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3771.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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