Alignments for a candidate for lysA in Sulfuritalea hydrogenivorans DSM 22779

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate WP_041096945.1 SUTH_RS02885 diaminopimelate decarboxylase

Query= BRENDA::Q9KVL7
         (417 letters)



>NCBI__GCF_000828635.1:WP_041096945.1
          Length = 422

 Score =  466 bits (1200), Expect = e-136
 Identities = 241/417 (57%), Positives = 308/417 (73%), Gaps = 10/417 (2%)

Query: 8   EDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYP----HLICYAVKAN 63
           +DG L  E V LA +A ++GTP YVYSRA L   +  +  ++  +      LICYAVKAN
Sbjct: 8   QDG-LRVEGVALAGIAARFGTPCYVYSRAALTAAYAGYRDALQAHGLADRSLICYAVKAN 66

Query: 64  SNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCF 123
           SNL +LN  ARLG+GFDIVS GEL RVLAAGG P K+VFSGVGK+ AEM+ AL+  I CF
Sbjct: 67  SNLAILNLFARLGAGFDIVSAGELARVLAAGGSPEKIVFSGVGKSRAEMRAALEAGIHCF 126

Query: 124 NVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVY 183
           NVES  EL  LN+VAG LG +AP+SLR+NPDVDA+THPYISTGL+  KFG+    A  +Y
Sbjct: 127 NVESASELDHLNEVAGSLGRRAPVSLRVNPDVDARTHPYISTGLKSAKFGVAIADAFDIY 186

Query: 184 RLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGV 243
           R A SLP++ V GIDCHIGSQL   AP  +A D++LAL+D L A GI + H+D+GGG+G+
Sbjct: 187 RRAASLPHIAVKGIDCHIGSQLLDPAPAAEAADKVLALVDRLAAAGIVLEHIDLGGGMGI 246

Query: 244 VYR-DELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNF 302
            YR DE  P  ++Y   +L +L   R+ +L+FEPGR++  NAG+L+T+V+ LK  E K+F
Sbjct: 247 QYRADEPAPATTDYLAPMLAKLAGRRE-KLVFEPGRSLVGNAGLLLTRVDVLKPGEEKHF 305

Query: 303 AIIDAAMNDLIRPALYQAWQDIIPL---RPRQGEAQTYDLVGPVCETSDFLGKDRDLVLQ 359
           A++DAAMNDL+RPALY AW DI+ +       G A +Y++VGPVCE+ DFLG DR L L+
Sbjct: 306 AVVDAAMNDLMRPALYDAWHDIVKVGADDTATGAAMSYEIVGPVCESGDFLGHDRLLALR 365

Query: 360 EGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLP 416
           EGDLLA+ S+GAYG  M+SNYNTRPR AEVMVDG   +L+R+REE++ L+ALESVLP
Sbjct: 366 EGDLLAILSAGAYGMAMASNYNTRPRAAEVMVDGGSVHLIRRREEIAELFALESVLP 422


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 460
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 422
Length adjustment: 32
Effective length of query: 385
Effective length of database: 390
Effective search space:   150150
Effective search space used:   150150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_041096945.1 SUTH_RS02885 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.16858.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16858.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.