Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_041101157.1 SUTH_RS17740 methionine synthase
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_000828635.1:WP_041101157.1
Length = 1231
Score = 1467 bits (3798), Expect = 0.0
Identities = 762/1234 (61%), Positives = 925/1234 (74%), Gaps = 28/1234 (2%)
Query: 7 QLRAQLNERILVLDGGMGTMIQSYRLNEADFRG----ERFADWPCDLKGNNDLLVLSKPE 62
+LR L +R+L+LDG MGTM+Q + L EAD+R RFAD DLKGNNDLL +++P+
Sbjct: 8 ELRELLAQRLLILDGAMGTMVQRHGLVEADYRAGVTNSRFADSAKDLKGNNDLLCITRPD 67
Query: 63 VIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTART 122
VI IH Y AGADIIETN+FN+T ++ A+Y + L+ E+N AAA+LAR AD T T
Sbjct: 68 VIGGIHAEYLAAGADIIETNSFNATRVSQAEYGLAELAFELNVAAARLARETAD--TFST 125
Query: 123 PEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIET 182
P+KPR+VAGVLGPT+RTAS+SPDVNDP RNITFD LVA Y E+ + L EGG D++L+ET
Sbjct: 126 PDKPRFVAGVLGPTSRTASLSPDVNDPGARNITFDALVADYVEAARGLTEGGVDILLVET 185
Query: 183 VFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALT 242
+FDTLNAKAA+FA++ F+ G P+MISGTITDASGRTLSGQT EAF+NSLRHA L+
Sbjct: 186 IFDTLNAKAALFAIEKFFDEAGRRWPVMISGTITDASGRTLSGQTAEAFWNSLRHARPLS 245
Query: 243 FGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQAG 302
FGLNCALG ELRQYV+ELS++ +CY++AHPNAGLPNAFG YD +A +I EW +AG
Sbjct: 246 FGLNCALGARELRQYVEELSKLCDCYISAHPNAGLPNAFGGYDETPQMLADEIAEWGKAG 305
Query: 303 FLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGER 362
+NI GGCCGT+P HI A++ A++G+ PR+ RLSGLE NIG DSLFVNVGER
Sbjct: 306 IINIAGGCCGTSPDHIRAIAAALQGMKPRRPASADFRLRLSGLEAFNIGGDSLFVNVGER 365
Query: 363 TNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAG 422
TNVTGS F R+I E ++ +AL VARQQVENGAQ++DINMDE MLD++AAMVRFL+L+
Sbjct: 366 TNVTGSKAFARMILEGRFDDALAVARQQVENGAQVVDINMDEAMLDSQAAMVRFLHLVGS 425
Query: 423 EPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVVV 482
EPDI +VP+M+DSSKWDVIE GLKCIQGKGIVNSISMKEG F+ A+L RRYGAAV+V
Sbjct: 426 EPDICKVPLMLDSSKWDVIEAGLKCIQGKGIVNSISMKEGEAKFLEQARLARRYGAAVIV 485
Query: 483 MAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDF 542
MAFDEQGQADT RKIEIC+RAY+ L + GFP EDIIFDPNIFA+ATGI EH+NYA DF
Sbjct: 486 MAFDEQGQADTYRRKIEICQRAYEALVAD-GFPAEDIIFDPNIFAIATGIPEHDNYAVDF 544
Query: 543 IGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQL 602
I A IK+ LPHA SGGVSNVSFSFRGND +REAIH VFLY+A++ G+ MGIVNAGQL
Sbjct: 545 INALAWIKQNLPHARTSGGVSNVSFSFRGNDAMREAIHTVFLYHAVKAGLTMGIVNAGQL 604
Query: 603 AIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNKR 662
+YDDL ELR+AVEDV+LNR+ + L+ELA + +G+ + + WR W V+KR
Sbjct: 605 GVYDDLAPELREAVEDVVLNRKVGAGDTLIELATRVKGAAKEQVVD---LAWRQWPVDKR 661
Query: 663 LEYSLVKGITEFIEQDTEEARQQATR----PIEVIEGPLMDGMNVVGDLFGEGKMFLPQV 718
LE+++VKGITE++ DTEE R P+ VIEGPLM GMNVVGDLFG GKMFLPQV
Sbjct: 662 LEHAMVKGITEYVVADTEECRAALAAAGKPPLSVIEGPLMGGMNVVGDLFGAGKMFLPQV 721
Query: 719 VKSARVMKQAVAYLEPFIEASKEQ-GKTN-GKMVIATVKGDVHDIGKNIVGVVLQCNNYE 776
VKSARVMKQAVA+L P+IE K++ G T+ G++VIATVKGDVHDIGKNIVGVVL CN Y+
Sbjct: 722 VKSARVMKQAVAHLIPWIEEEKKRTGSTSKGRIVIATVKGDVHDIGKNIVGVVLGCNGYD 781
Query: 777 IVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGAT 836
I+DLGVMV A+KIL AKE A IGLSGLITPSL+EM ++A EM+RQGFT PLLIGGAT
Sbjct: 782 IIDLGVMVSADKILHAAKEHGAQAIGLSGLITPSLEEMSHIASEMQRQGFTQPLLIGGAT 841
Query: 837 TSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGR 896
TS+AHTA+KI NY+GP VYV +ASR VGVV LLS RD +V +YE VR QH
Sbjct: 842 TSRAHTAIKIAPNYAGPVVYVPDASRAVGVVTRLLSIDMRDAYVDEIAADYEKVRGQHAN 901
Query: 897 KKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEV-EASIETLRNYIDWTPFFMTWS 955
KK V+LEAAR N + Y P +LGV + + + L YIDW PFF TW
Sbjct: 902 KK-GVALVSLEAARANRARLN---YAPVKPRQLGVTVLKDLDLAELAKYIDWGPFFQTWD 957
Query: 956 LAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYR 1015
LAG YP+IL+D VVG A+ +FKD ML +L AEK ++ V GLFPAN VGDDI Y
Sbjct: 958 LAGSYPKILDDAVVGDAARNVFKDGKAMLRQLIAEKWISANAVFGLFPANAVGDDIAFYA 1017
Query: 1016 DETRTHVINVSHHLRQQTEK-TGFANYCLADFVAPKLSG------KADYIGAFAVTGGLE 1068
DE R + H LRQQ E+ G CL+DFVAP + DY GAFAVT GL
Sbjct: 1018 DEARATPLMTWHGLRQQQERPAGKPQQCLSDFVAPGVGAGDTANCAPDYAGAFAVTAGLG 1077
Query: 1069 EDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRE 1128
+ FEAQHDDY+ IM+K+LADRLAEA AE+LHERVRK YWGYA +E L LI E
Sbjct: 1078 IEKKLAEFEAQHDDYHAIMLKSLADRLAEAAAEWLHERVRKEYWGYAGDEALDCAALIDE 1137
Query: 1129 NYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSK 1188
Y+GIRPAPGYPACP+HT K ++ LL+ ++ GM+LTES+AM P ASV+G+Y +HP+S
Sbjct: 1138 KYRGIRPAPGYPACPDHTSKGALFGLLDAPQNAGMQLTESYAMTPAASVAGFYLAHPESH 1197
Query: 1189 YYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNL 1222
Y+AV +I RDQ+ED+ARR G+++ E E+WLAP L
Sbjct: 1198 YFAVGKIGRDQLEDWARRCGITIQEAEKWLAPLL 1231
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3682
Number of extensions: 170
Number of successful extensions: 10
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 1231
Length adjustment: 47
Effective length of query: 1180
Effective length of database: 1184
Effective search space: 1397120
Effective search space used: 1397120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Align candidate WP_041101157.1 SUTH_RS17740 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.29184.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29184.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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